cntnap2b (cntnap2b,LOC108280767,LOC108433079,LOC107713665,LOC107757823,LOC107599243,LOC107663527,LOC107656139)


Basic Information

Item Value
gene id cntnap2b
gene name cntnap2b,LOC108280767,LOC108433079,LOC107713665,LOC107757823,LOC107599243,LOC107663527,LOC107656139
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 17238926 ~ 17293166 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026946359.2
TCCGAGACCTCGTTCATTTCAGCACCATCCCGATTGCGAGGTGGTGTCTTGGCTATCGGCGGTGTAACCATGCAAAGCGAGCAAGCGAACAGACGGTCAGAGGAACGACGATGCTGCGAGAAACGACACGACTTCCTGCCCTGTGCGCGAGCTGTCGTTGCTGGGTGATATATTAGAAATACCGGATGTAGTATTGCGCGCGTGGAGCAGTATACAGAGCAGTATAGAGCAGCAGCAGTAGCTTATAGATTATTACTGAAACAAAACAGGACCTTAGCAGGGCTTACAGTGTTGTGGGACCCCTTGGAGAAGGGAGGGGTGTGAGTACACCCgtacaggagaaaaaaaagacagtccCTTTGTTTACATCAGGATGGATGTGAGGATGCTGCGGTGTAAAGCAGTGGAGATTACACTCCTCCTATGGATACTGAACGCGCTTCCGAAAAACGACGTGGCGCGCGCTGCATCCCAGCGGTGTGATGAGGTTCTGGCAAGTCCTCTCCCCTACAGCGCCTTCAGCAGCTCCTCTGTGTTGGCTCCTGATTTTGGTGCCGGCTACGCTAAACTCAACCGCAGAGTCGGGAATGGAGGTTGGTCTCCACTGGACTCTGACAGGTATCGATGGCTGCAGGTGGACCTCCGGGGCAGGAAGCAGATCACAGCCATCGCAACGCAGGGTCGATACAGCAGTACTGACTGGACTAAACAGTACCGACTGCTCTACAGTGACACAGCAACTAACTGGAAGCCTTACAGGCAGGACGGCAACATATGGACATTTTCAGGTAACTGGAACTCGGAGAGAGTGGTGCGTCACGAGCTGCAGTACACCATCGTGGCCCGATATCTGCGCTTTATTCCCTTGGAATGGAGTGCAGAAGGGCGAGTTGGGCTGAGGGTGGAGGTCTACGGCTGCGCatactGGGCCGATGTGATCAGTTTCGACGGACAGGGAGTAATCTCCTACCGTTTCCGacagaagaagatgaagatccTGAAGGACGTTATCTCGTTGAGGTTTAAGACCAGTAAAGGAGACGGGCTTCTGCTCCACGGAGAGGGACAGCAGGGTGATTACCTCACTCTGGAGCTACGCAGGGCCAAACTGCTGCTACAGATCAATCTGGGTAGCAATCAGTATGGCTCCATCCAGGGTCACACTTCAGTGTCCAGCGGCAGCCTTCTGGATGATGACCAGTGGCACGCCGTGCGGGTTGAAAGATACCGCCGCAGCGTGAACTTCACCCTGGACGAGCACACGCAGAGTTTCCGAACCAACGGCGAGTTTGACCATCTCGACCTAGACTACGAGATCAGTTTTGGAGGAATGCCTGTATCAGCCAAGCCCAGTTCAGGAGCTCCGCAGAACTTCATCGGCTGCATGGAGGACATCCACTACAACGGGGACAACATCACCAACCTCGCACGCCGGAAAAGAGTCGACACGTCCAGCTTTCGTAACCTGACGTACACGTGCGGAGCCTTGCCGACGTTCCCAGCCTTCTTTAACTCCAGCAGCACTCTGCAGCTGCCGGGCCGCAGCGACGGAGACACCGTGGCGGTGACCCTGCACTTCCGCACGTGGAGCCCCAGCGGCCTCCTGATGTTCACTCCTCTAATGCCCGGGGGAGTCGAGATCAGCTTGGTGGAGGGCAAAGTGGTGGTGCACATCTACATCTCACAGGGAAAGAACACACGGGTTGACATCTCCTCAGGTTCAGGCCTCAATGACGGCCAGTGGCACAGTGTTCATTTCCTGGCGCTAGAGAGCTTCGCTATGCTCACCATCAACGGTGATGAGACGTCATCCGTCAGAGCCACGCTCCCCATCCAGATCCGCACAGTGGGAGATTACTACTTTGGAGGCTATTTTCCACGGACAGACCTCTCGCCATCTCAGCGCTCCTTCCACGGCTGCATGCAGCTCATCCACGTGGACGAGCAGCTGGTGGACCTGCAGGCTGTAGAGCAGGGCATGATGGGAAGTTTTGAGAATGTCAGCCTGGACATGTGTGCCATCATCGACAGATGTGTCCCGAACCCCTGTGAGCACGGAGGCCGGTGTTCTCAGACTGGAGACGTGTTTAAATGCTCGTGCGATGGAACTGGATACACCGGAGCGACGTGCCACACATCGGTCTACGAGCAGTCATGTGAGGAGTACAAGCACCTGGGTCGACGCTCAGACTCGTACTGGATCGATCCGGATGGGAGCGGACCCCTCGAACCCTTTAAAGTCATCTGCAACATGACAGGTGACAAagtgtggatgatgctgatgaatGATCTGCCAGCTCAGAGTGCAGTGAACTCAGCGTCTGCTCCCGAACAGGGAACTGTACTGAAACTCAGTTACAATGTGTCTACAGAGCAGATAAACGCCATCACCAGCAGCGCAGAGCACTGTGAGCAGTATGTAGCCTACATGTGCCGAATGTCACGCCTCCTCAACTCcccagaCGGCCCGTCGTACACGTGGTGGGTCGGCCGCGGGAACGAGAAACACTTCTACTGGGGCGGCTCAGGGCCGGGAATCCAGAAATGCGCCTGCGGCATCGAGCGCAACTGCACCGACCCAAACTACTACTGCAACTGTGACGCAGACCAGAGACAATGGAGTGAGGACGCAGGTGTGCTGATGTATAAGGACCATCTCCCTGTTACTCAAGTGGTTGTTGGAGACACACAGCGCTCGGGATCCGAGGCCAAGCTTACCGTGGGTCCACTCCGCTGCCACGGAGACCGAAACTTCTGGAATGCCGCGTCTTTCATCACCCCAGCAGCGTATCTGCATTTCCCCACTTTTCAAGGCGAGTCCAGTGCCGATATCAGCTTCTACTTCAAGACGTCGTCCTCGCACGGCATCTTTCTGGAAAACCTGGGCAACAGCGATTTCATTCGCATCGAGCTGAAAACTGCTAACGTGGTCTCCTTCTCCTTTGACGTGGGCAACGGGCCGGTGGAGTTGAGCGTACGCTCACCGATGCCCCTCAACAACAACCAATGGCACAGGGTGGAGGCCGAACGCAACGTGAAGGAAGCCGTACTGCGATTGGACAAAGTGTACAGAGACGTGCGTCAGGCCCCGCCCCAAGGCCACACCCGTCTCCAGCTCTTCAGTCAGCTCTTCATTGGCGCCTCAGGAGGGCAGAGGGGATTTCTGGGATGCATCCGCTCGCTCAGGATGAACGGCGTGACCCTTGACCTGGAGGAGAGAGCCAAGGTGACTCCAGGAGTGAAGCCTGGCTGCTCGGGTCACTGCCCCAGCTACGGCGCGCGCTGCCAAAATGGAGGCAAGTGTGTGGAGAAATATAACGGATACACATGTGACTGCAGCCTCACGGCCTTCGACGGACCCTTCTGCTCTGACGATGTGGGCGGGTATTTTGAGAGCGGCACGCTGGTCCGCTATGACTTCATGTCTGGCAGCATCTCGTCTCCTGTGGTGAAGAGCACATTAGGAGCTCTGAATGTGGAGGGAAACCTGACGCAGGAGGAgctcagcttcagcttcagcacCTCTCACGCCCCCTCCGTCCTGGCCTACATCAGCTCCAGGACTCAGGACTATCTGGCAGTGGTTCTACGCCACAACGGTACGCTGCAGATCCGCTACAACCTGGGTGGCCTAAAGGAGCCTTTCATAATCAGCCTGGATCACCGCAACATGGCCAACGGTCAGCCGCACAGCATCAACATCAGCCGACATGACAGACTCGTTCATCTGCAGATAGATCATTACCCCACCATGAGCTTCTCCCTCCCTGAAGCGTCTGACACCGAGTTCAACCTGATCAAGACCATTTTTCTCGGAAAAGTCTTTGaaacCGGTCAGGTGGACAGCGTGCTCATAGAGCGTTATAACACTCCAGGCTTCGTCGGCTGCCTCTCCAGGGTGCAGTTCAACCGCATCGCACCTCTGAAAGCGGCGTTGAGACCGAGCGCTCCATCCACCGCCTCCATCCAGGGCGTGCTAGTGGAGTCCAACTGCGGCGCTTTACCGCTCACTATCCCCGCCATGTCGGTGACCTTCGACCCCTGGCAGCCCGACTCAGCCGGAATCCAGTTCCCGTTCGATGACGAGGGAGTGAACCGGGATGGAGTGAACCGCGACTCGGCGATAATCGGAGGCATCATTGCAGTCGTGATCTTCTCCATCCTCTGCACGCTGGTGTTCCTGGTGCGCCACATGTTCCGCCACAAGGGCTCGTACCACACCAACGAAGCAAAGGGGGCGGAGTCAGCGGACTGTGCTGACGCCGCCATCATCGTGAACGACCCCGCCTTCACAGAGACCATCGACGAGAGCAAGAAGGAGTGGTTTATTTAAGCCCCTGGTGCATGAGGAAAGGGGGAGTtacatacacagagacacatcaTGAGACCAACATtaactctcagtgtgtgtgtgtgtgtgcgtgtgtgtgtgtgtgtgtgtgtgtggcattatACGGACTCCAGGAggaagtgaagtgtgtttacTGACGGACAGGACACTGTCCTGGAACTACgctgtatataaaattcactTCATCCTGTTCACATTGAGAAAAACATCTCTCTGCTTTCCATGGACTGACAAATGGAAGCAACCGGAAGCATCCATCAGAATGATGGACGGACTTCTTCTGACTGCCTTCTTCACAAACCCCAAGAGCACAACGGATATCTGTGTTACAGATGATGACGTGTGATTGTATGTCAGTATGTTTTCAGTGATACAGCACAGTAACATGGGACATGAATGACGTTCCTCACTGTTCCAGGGGCTTCTGTGTACTTTATGTTCTTAGAGTTCTTTGTGTTCTGTTGTTCATccctgctgagtgtgtgtgtgtgtgtgaatgtgatttATTCCATCCCCTCGTATGGAAAAACGGCCCACATCCAGCTTCATTAATGCTGTGGGCTTTATTACAGAACGTTAGAAATGATTCTCTCTGAAGCAAGATGATTCCCTGCAATTAATATAACAGGAAAGGATTTGGTTCAGTTCTGCTGACGGTCCTGAGGGATTTAACTCTGTGTCATTTCACAGATTCagaagtgttttttgtttgattttgtttgattttgtttgattttgtttgctcgtttgttttttgtgtggttCAAAATATACAGCACCAAAATGACAACCTTTCAAAGGACACAGAAGTGGagacttttttctgtctttctttagctctttctgtctgtccttctatctttcattctgtctttctttctttctttatttttacttttatttatttatttatttatttatttatatttcctttttaaaatgtatttatttatttatttactctttttaatttttgttgtgAAAAGTAAGACACAGTGCCAAAATGACTTTTCACAGGATGCAGAAATggataaataacttttttttttattatatgtgtGGTTCTAAAGTTAGATACAGTGcctaaaatttatttatttgtttgtttgtttgttttgtctgtttgattgtttgttagttctttgtttgtgttgttctAAAGTAAGATACAGTGCCAAGATGACCTTGCACCGGCTTGCCCAGGATACAGAACTTGAGTACagcattgtttgtttgtttgtttgtttgtatcaTTGATTCAAATGCATTGTCCTACAGTAAGACACGAGCTTTCCCAGGCTTTCACAGCATACAGAACTGCAGTACAACCATGAGCATGTTCTCTGACGCACTTCAGCAAATTCctgatttgatttgatgttGAGTGAGAACGTGCAGCTAAATAATTCCTCACAACATTCAGACGAGCTCAGATCAGAAAAGTAGTCGCAGGTGAATTATACGATTATCAAATATTGAAGACACACCTTCATAAATCCTGCTGGCTTAAAGGGAAGAATTAGTTTATGATGGTGTTATGTCAGAATTTCAATTTACTGATAAGTTACAGAGTAGTCTAGTGATGGCTGGAAGAGAACCAGCATTTTTCCAACATATCTACAGGcaagtgcaaatgtttgtgcCCCCGTGGTTGttgaatgagggaaaaaaaataaaatgtacctCTATTTTGCAAATGATGCCcaaatatacaccgatcagccataacattaaaaccacctgcctaacattgtgcctcaaaccattcctgaacaatttttgcagtgtggcagggcgcattatcctgctgaaa

Function

symbol description
cntnap2b Predicted to act upstream of or within protein localization to juxtaparanode region of axon. Predicted to be located in membrane and paranodal junction. Predicted to be integral component of membrane. Is expressed in telencephalon. Human ortholog(s) of this gene implicated in several diseases, including Pitt-Hopkins syndrome; autism spectrum disorder (multiple); communication disorder (multiple); cortical dysplasia-focal epilepsy syndrome; and social phobia. Orthologous to human CNTNAP2 (contactin associated protein 2).

NR:

description
contactin-associated protein-like 2

GO: NA

KEGG:

id description
K07380 CNTNAP2; contactin associated protein-like 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026946359.2 True 6164 mRNA 0.51 25 17238926 17293166

Neighbor

gene id symbol gene type direction distance location
xcr1b.2 NA coding upstream 157268 17075730 ~ 17081658 (+)
xcr1b.1 NA coding upstream 166969 17066201 ~ 17071957 (+)
ghrhra LOC108280336,LOC108433063 coding upstream 247814 16975923 ~ 16991112 (+)
LOC117599965 LOC108280683 coding upstream 282366 16952977 ~ 16956560 (+)
ftr67 LOC108280685 coding upstream 291580 16941842 ~ 16947346 (+)
cul1a LOC108280768,LOC108433080,LOC105024245,LOC106599302,LOC106569218,LOC107663526 coding downstream 1998 17295164 ~ 17311204 (+)
mcm6l mcm6l,LOC108280894,LOC108433082,LOC107656140,LOC107713663,LOC107757789 coding downstream 19916 17313082 ~ 17321037 (+)
ahrrb LOC108280895 coding downstream 30745 17323911 ~ 17347484 (+)
exoc3 exoc3,LOC107757821,LOC107656144,LOC107713660 coding downstream 55744 17348910 ~ 17361297 (+)
si:ch211-106n13.3 LOC108280813,LOC108433067 coding downstream 107225 17400391 ~ 17427264 (+)
G321704 LOC108410862 non-coding upstream 278192 16958745 ~ 16960734 (+)
G321602 NA non-coding upstream 345902 16892813 ~ 16893024 (+)
G321591 NA non-coding upstream 379348 16792714 ~ 16859578 (+)
G321585 NA non-coding upstream 449319 16789186 ~ 16789607 (+)
G321589 NA non-coding upstream 466477 16759842 ~ 16772449 (+)
LOC117599934 NA non-coding downstream 232405 17525571 ~ 17537160 (+)
G322127 NA non-coding downstream 338048 17631214 ~ 17631512 (+)
G322146 NA non-coding downstream 428772 17721938 ~ 17786701 (+)
G322233 LOC108280496 non-coding downstream 561382 17854548 ~ 17855258 (+)
G322324 NA non-coding downstream 781163 18074329 ~ 18074748 (+)
LOC117599970 LOC108280611,LOC108261562,LOC108261692,LOC108261605 other upstream 379244 16838768 ~ 16859682 (+)
LOC117595733 LOC108280611,LOC108261562,LOC108280614,LOC108280616,LOC108261605,LOC108261692 other upstream 445228 16791402 ~ 16793698 (+)
LOC117599973 LOC108280611,LOC108261605,LOC108261562,LOC108261692,LOC108280616 other upstream 449958 16756631 ~ 16788968 (+)
LOC117599972 LOC108280611,LOC108280616,LOC108261562,LOC108261605,LOC108280614,LOC108280615,LOC108261692 other upstream 490586 16742805 ~ 16748340 (+)
G321257 LOC108280695 other upstream 1106562 16131335 ~ 16132364 (+)
fuz fuz other downstream 185668 17478834 ~ 17483677 (+)
egfra egfr,LOC107747514,LOC107691124 other downstream 277483 17570649 ~ 17636609 (+)
npc1 npc1 other downstream 295906 17589072 ~ 17666213 (+)
si:ch211-162e15.3 LOC108280563 other downstream 932755 18225921 ~ 18227233 (+)
pex5lb pex5lb,LOC108280742,LOC108440867,LOC107653517,LOC107564246,LOC107660316 other downstream 1100857 18394023 ~ 18430022 (+)

Expression


Co-expression Network