pbx1a (pbx1a,LOC103479586,LOC104918287,LOC103143038,LOC107083372,LOC103396165,LOC101069707,LOC108438878,LOC100704482,LOC108280905,LOC106929027,LOC107732204)


Basic Information

Item Value
gene id pbx1a
gene name pbx1a,LOC103479586,LOC104918287,LOC103143038,LOC107083372,LOC103396165,LOC101069707,LOC108438878,LOC100704482,LOC108280905,LOC106929027,LOC107732204
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 19909109 ~ 19985267 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026946364.2
tgtgtgagagagacagagagagagagagagagagagagagagcgggagagagagagagagagagagcgggagagGCTATGGAGGAGCAGCCGCGGTTGATGCACCCTCACGGCGTGGGCTTGGCGGCGCACCCGGGCCTCACGCACCGTCCCCCGGACGTCACCGCGGGAAGCGACGGCGACTCGAGGAAGCAGGACATCGGAGACATTTTACAACAAATCATGACCATAACGGACCAGAGTCTGGATGAAGCTCAGGCCAGGAAACACGCTCTGAACTGTCACCGCATGAAACCCGCGCTCTTCAACGTGCTGTGTgaaattaaagagaaaacagtgttGAGTATTCGTGGCGCGCAGGATGAGGAGCCTCCCGATCCTCAGCTCATGCGATTGGATAACATGCTCTTAGCGGAGGGCGTGTCCGGACCTGagaaagggggcggagcttcagcgGTTGCCGCAGCCGCTGCAGCCGCAGTGGGCGGAACCGGAAACGACAACTCGGTGGAGCATTCGGACTACAGAGCGAAACTGACTCAGATACGACAGATCTACCACACAGAGCTGGAGAAATACGAACAGgcgTGTAACGAGTTTACCACCCACGTGATGAACCTGTTGAGAGAACAGTCTCGTACGCGTCCCATTTCACCCAAAGAGATCGAGCGCATGGTCAACATCATCCACCGCAAATTCAGCTCCATACAGATGCAGCTCAAACAGAGCACGTGCGAAGCCGTCATGATCCTGCGCTCACGCTTCCTCGACGCCAGACGGAAGCGACGGAACTTCAACAAGCAGGCGACGGAGATCCTGAACGAGTATTTTTACTCGCACCTCAGTAACCCGTATCCCAGCGAGGAAGCGAAAGAGGAACTGGCCAAGAAATGTTCCATCACCGTCTCCCAGGTGTCGAACTGGTTTGGAAACAAGCGGATCAGATACAAGAAAAACATCGGAAAATTCCAGGAGGAAGCGAACATGTACGCCGCCAGAACGGCCGTAAACGCCGCCAGCGCTTCCGCTCAGGGCAGCCAGGCGAACTCGCCCTCCACGCCCAACTCCGCCGgtggatACACTTCGCCATGTTATCAGTCAGGCAGGAGGATACACTGACGCTCTCGCTGCCACTCAGCTCTACAGTCCACAGGGCATCAAcgcGAACGGAGTTTGGCAGGACGCACCGACTCCATCGTCCGTAACTTCACCTACAGAAGGACCTGGAAGTGTTCAGTCTGATACGTCTAACTAAAATtaacacacacgacacacacacacacaaac
>XM_034314903.1
tgtgtgagagagacagagagagagagagagagagagagagagcgggagagagagagagagagagagcgggagagGCTATGGAGGAGCAGCCGCGGTTGATGCACCCTCACGGCGTGGGCTTGGCGGCGCACCCGGGCCTCACGCACCGTCCCCCGGACGTCACCGCGGGAAGCGACGGCGACTCGAGGAAGCAGGACATCGGAGACATTTTACAACAAATCATGACCATAACGGACCAGAGTCTGGATGAAGCTCAGGCCAGGAAACACGCTCTGAACTGTCACCGCATGAAACCCGCGCTCTTCAACGTGCTGTGTgaaattaaagagaaaacagtgttGAGTATTCGTGGCGCGCAGGATGAGGAGCCTCCCGATCCTCAGCTCATGCGATTGGATAACATGCTCTTAGCGGAGGGCGTGTCCGGACCTGagaaagggggcggagcttcagcgGTTGCCGCAGCCGCTGCAGCCGCAGTGGGCGGAACCGGAAACGACAACTCGGTGGAGCATTCGGACTACAGAGCGAAACTGACTCAGATACGACAGATCTACCACACAGAGCTGGAGAAATACGAACAGgcgTGTAACGAGTTTACCACCCACGTGATGAACCTGTTGAGAGAACAGTCTCGTACGCGTCCCATTTCACCCAAAGAGATCGAGCGCATGGTCAACATCATCCACCGCAAATTCAGCTCCATACAGATGCAGCTCAAACAGAGCACGTGCGAAGCCGTCATGATCCTGCGCTCACGCTTCCTCGACGCCAGACGGAAGCGACGGAACTTCAACAAGCAGGCGACGGAGATCCTGAACGAGTATTTTTACTCGCACCTCAGTAACCCGTATCCCAGCGAGGAAGCGAAAGAGGAACTGGCCAAGAAATGTTCCATCACCGTCTCCCAGGTGTCGAACTGGTTTGGAAACAAGCGGATCAGATACAAGAAAAACATCGGAAAATTCCAGGAGGAAGCGAACATGTACGCCGCCAGAACGGCCGTAAACGCCGCCAGCGCTTCCGCTCAGGGCAGCCAGGCGAACTCGCCCTCCACGCCCAACTCCGCCGgttctGCTGCGTCTTTTAACATGTCTCACTCCGGCGATTTGTTCATGAGCGTTCAGTCTCTGAACGGGGACTCGTACCCGGCGCCGCAGGTGGGCGCTAACATACAGTCACAGgtggatACACTTCGCCATGTTATCAGTCAGGCAGGAGGATACACTGACGCTCTCGCTGCCACTCAGCTCTACAGTCCACAGGGCATCAAcgcGAACGGAGTTTGGCAGGACGCACCGACTCCATCGTCCGTAACTTCACCTACAGAAGGACCTGGAAGTGTTCAGTCTGATACGTCTAACTAAAATtaacacacacgacacacacacacacaaacatgacacGACAATACGCTACTCTCTACACACCATCACAAcatctcactatctctctcttaCTACTGCAGAACatttggaataaaaaaagaaacaaaaaaaagaagaaagaaaaaatgtgctAATGTTTTTCACTCGTCTCTGAGAGTTTGGTTGGATATTTAGTGACAGAACAAATCATTATCGCAGACCCTTATTGTTCacttttaattctttattctacctctgagagagaaaaaaacagttaatatgAGATGAAAAAGAGCAATCTTCGGTTTctaaaagaaacttttttccGTTGTGTCCAAGTGGAAATTTTTTCTTTATCGGTACGTTGTGTCCGTCGTTCCGTTTCACTTTTCGTATCGCTTGCTTACAAAACGTAATCGTTTAAGGATAAATGTGAAGTAACGGATCCCCCGTTTATTCGAAATACCACTCACGTTATTTATATATTGCggatacataaatatattttatgccCCTGAGAAGAATGATcaattttaattctttaatcttttgttcttctttcgcTTAACCTCGTCAGAAAACAGCACGGGTTTGTTGTCTGAGATCTGCGTTTTTATTCACTATAAAGTGACTcaaaagtgatattttatgATTGTCTTAGCTCGAGCtggaaaaggaataaaaattcatgaatatttaatgagCGTGTGCGGCTTCGTCCAATCACAGAGCATCAAGTCAGACCATCacgatgtaactataaacaaatgttttactcTTATTTATACACGTATTAATGAGGATAGTACGGAAGCCTGGggaaggtttttctttttttcttgcactACGGGATACGTAATCAGCGTTAAGAAATTGCGTAAGATTTAGCTACTCGAGTGAGTGAAACAGCACACGTGAATTGCTCATAAAATCCTACAAAGGAAATAAGCATGAAAAAAAGGAATTCAACGTTAGCTTGATACGGAGAaggtgtttctatagtaactgagCAAATTGACGAGCCAGGCTTATTGACTAAGCTCGCTTCGTAAAATACGAATATCAATTCGTGGTCAACGTGGTGAATCCAGCTAACTCACCACATACGAAGAACGAGACCCAGGAACTGACGTTACCAACTATACGTGACGTAACAATCGTTCTTCTCTCGTTTTACTAGTTTGCTCTCAGCTAACTATCTGTTACTAACTGttgctctgtgattggacaaAGCAAcgtttttaatgtaattttataataatttatcatttttccaCGGGGTCCTGGAGGAAAATTATCCGATAAAGCGACCGGAAAACGGATTCAGACACGGACCAGGATTTTCACAAGGAGCTTAATGAGcttttttataaaacataaacgTTGGGAAAACGATGTAGCGCTTGAACCTGATCCCGATTCAGTGAACAGCTGCGATTCCGTGGTCcgtaacaacaaaacaaaacaatggaggttttttttaagcatcttTGCGAATCCTGGATGCTCCTCATCCTCAGATCATGTGATTAAATCTTTAATCTGAGATCTGGTTCAACGTTTCTGAGCCAGATAGCTAGATTTCGATCCTTTGTGTCGTTTTTCTTTTGCTAGAAATGAATTCATTATTCATactgacaacaacaacaacaacaacaacaacacaaacaccacgtCGCTGATTTCATTTGCACTCATTTCCTTCTTGACCTcttttttttgattgtttgttttgttttaaagacaCAGTGCAGCGAACCATAATCTTTATGTCAACTTGCGGCAGAAGCATTACGtcgttattgtgtgtgtgtgtgtgtgtgtgttccttcctgCTCTACGTTTTTACTTCAGATCACTCACTAAACTATTTCACATTATAACTGAATGACACGAAGTCGTAACGTGTTCGTTGTTAATCGCACACTCGCATTTCGTTTGTGTTTTGTATGTACTAAAATTGCTGATCTACGTATATGAtgtaaaaactatttttatttttttaataacttttttacatcttgtttttgtctccacatacataaacatacacgCTCCTTCATCCTAGCACTGTTTAATTTTAGCGTTCTTATCCACTTCCCCTAACACATCTTCAGTATTTTGGACAGAAATGTTATTTGTTTCAGTCAAACGTTAACACGTATTAAAgatgtttagattttaaattaCATCCAACGAAACTGTGAACGTCAACTGATACTCTAGCTAATGATTATGTATCAAATAAACGTTCATTGTAACTTGTAACAAGTTAATCTAGctacttagctaacattaccaGACGTTTTCTTTGATcaacatgctagctagctagctatcccTATTAAGCATTGGATGCTACATCAGTATTAGTGTGGACAGGATATGAACGTTGGACattgttgttataattattaatgtaaatgCATTACACTTATAGCCATCTTACACATTATGCATGTTAACGTGACATGTTAACATAACTCCAAGCTTTttacttctttaataaatgaattataccAGAGAAAAACTAAACTTTATAACTTCTGAAAGAACCTCTGAAAGGTTGGTGATTTCTCTGGTCAAATTTCATTGAGATAAAAATTGTTGCGAAGTGAAAGTGACAGAAATCGCATCTTTAAGGTCTCACGTCCCTTCCTGTTTTCTGAATGAAATTCATCAGGCGGAAAAGACGACTCACCGAAGGGGAACGGACGTGAGACGTGAAAGACGCAGTTTTTTAATCTCGGTGGATTTTTGACCAGAGAATTCTCAGCCAATAGAAAAGAAGAAGGCGGGGCTTCGTGCTTTTTGATCGGAGTTGCTCACTATTAAGTGGCGACACaaaatttttgctttttttttttttttttttgctgttactAGACGCATATTTGGAAAACAAAAGTAGTGTTAAGAAGAGTCACATCGACATCATGTATAATAAAAATAGGTACAAGATAGAGATGGTACTGATCCGAATCAGGTACTGTTTCAGAATCGGGCCGatagcagaaaaaaatgatggaTCGGATATTGAAGaaaacatcaaacaccagaTCCTGTAACGAACGGtgaagattggaattggatttggaaaagaaatttatttttggacCTGGAAATGTTTTGTCTTTGGTTAGGATTcggattttattacatttatactttattatatttattatatttacactgtaaGTCAGAGATCACCAACCCTCCTCCCTGAGATCTACCTTCCTGCAGGTTTCATCTCCATCCATAATCTAACACACCTGTTTTACCTGATCAAGAGCTTCTGAAGGCACTGAGTAGATGGTGAGGTGGGCACGACTACGATTACTTCTTCAGGAAGGTCAATCTCCAGGAACAGGGTTGGTGACCGCTGCTCTAAGTGATCGTTCTGTCTCTACTATAAGCTGTGATGCGTTTCTAGAAAAAATTATAACAACGTGTGTAATGGCTTATGACGCATTATAACACTTGAATGTGTTCGTAGTTTATTCTAGAACATTTGACCAATTTTGTGTGCCGTGTCTCTGGATGTGTGTTTAAGGGGAAGTCGATAAGGACGCCTTAACGCCTTTAATGAACCGCAGCCGTGACCTTTTTAAACCAAATCCGCTGTATAAACTCTGTGTCAAGTggctttactgtcatttcagACATACACACTGAAaggaaacaacgttcctccaggaccggggtgctacataaaacaacccagagctacatgagactacacgatactacataaagtgcacatcaagctgcacaagacagtacaatcgCTACTAAAGCAGGAACGCAAACATACgcaaatgtgtaatatatactGCTCTTACGTCTTTGCGTTCGTTAGTCGCTTCTCTCGGTTATGTAGcgcttgttaaaaaaatacagcttgtaaattgtgtgtgtgtgtgtgtgtgtgtgggtgtgtgtgtgggtgtatggaTTTCTCCTGACTCACCCTCAGCTAATGTCGCGTCTCTGCCTAATTGACACAAAcattattggggaaaaaaaatgaattcttGTTTGAAAATATATCCGCGTCGGTGACGGCTCGGGTAACgaagtttgtttttctgtacaTTGGATCAGAATCCACTTAAAAGGGGAAGTCATTACGTTAATGCGGTTAGGACTTTTAGTGTAAGCGATGATTTTGCAGGTAAAACTCGGTTAAAGAGGACTTTTTGACCTCGATGAACTCGGGGAAAGTAAAACTCAATTTGTTACGAAATTCCTCACGTATTTGCGTAGTCTGTAATCGTATAACGATGTCATATTAACGCCGTATAGATCGATCGATTTCAGACGCTGCGGCAACAACACGGCTGCACGgattcaaaataaaagaataacgTAGTCCGCATTTAGTGCagcataaattaaaataatgtttaataaaattattaatataaatgtgtaatatttccAATTATTGTTTAGTTTTCtctgcttttatgttttttttttaaacattttattcatccaGTATTGTATCCATGTTTCAAtgttaaacaaaacattacaaCTTTGCCAATTTTCTGGctattttaataacaatttcaGCACCTACATAACTTCATTTCTAAACTAAATAACGTACGTACGTGTTCTGAAGAAATTCGGTTCTCCGAGCGTTCCTGTTATTAAATTGTACATATTTTCTGGTGAAACAGATTCGACTCTTCACCTGTTCACTAAACTTCACTCAATCATGATGAACCATGCAAAATGTCTGAGTCCTATAaaagcttgtttgtttttttttttaatcacaaaaatgTTGTGTCTAAATGAACTGTTCATCTTCAATAAATGTTGta

Function

symbol description
pbx1a Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within hemopoiesis; swim bladder morphogenesis; and vasculature development. Predicted to be located in nucleus. Is expressed in several structures, including central nervous system; head; pleuroperitoneal region; presumptive swim bladder; and swim bladder bud. Human ortholog(s) of this gene implicated in B-lymphoblastic leukemia/lymphoma. Orthologous to human PBX1 (PBX homeobox 1).

NR:

description
pre-B-cell leukemia homeobox 1a isoform 1

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0048795 swim bladder morphogenesis biological_process
GO:0030223 neutrophil differentiation biological_process
GO:0060216 definitive hemopoiesis biological_process
GO:0001944 vasculature development biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09355 PBX1; pre-B-cell leukemia transcription factor 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026946364.2 False 1286 mRNA 0.56 8 19913912 19985267
XM_034314903.1 True 6202 mRNA 0.41 9 19909109 19985267

Neighbor

gene id symbol gene type direction distance location
ptprfb ptprfb,LOC108280478 coding downstream 240214 19512722 ~ 19668895 (-)
st3gal3b LOC108280530 coding downstream 452694 19393253 ~ 19456415 (-)
LOC113546452 LOC108280527 coding downstream 524792 19364746 ~ 19384317 (-)
pif1 pif1,LOC107551719,LOC104945614,LOC107700539 coding downstream 578240 19316638 ~ 19330869 (-)
nsun4 nsun4 coding downstream 595435 19310150 ~ 19313674 (-)
tmem275 LOC108280259 coding upstream 120705 20105972 ~ 20110891 (-)
kncn kncn,LOC107700491,LOC107710543 coding upstream 126103 20111370 ~ 20121708 (-)
cdc20 cdc20,LOC107732200,LOC107553255,LOC107700550,LOC107563294,LOC107710546,LOC107677877 coding upstream 165750 20151017 ~ 20157238 (-)
zfyve9a zfyve9,LOC108280307 coding upstream 200771 20186038 ~ 20211147 (-)
thpo LOC108280322 coding upstream 226432 20211699 ~ 20218591 (-)
LOC117599996 NA non-coding downstream 92044 19815214 ~ 19817065 (-)
LOC117599987 NA non-coding downstream 94898 19810468 ~ 19814211 (-)
G323327 NA non-coding downstream 306773 19602109 ~ 19602336 (-)
G323308 NA non-coding downstream 415379 19438223 ~ 19493730 (-)
G323303 NA non-coding downstream 517752 19391157 ~ 19391357 (-)
G323706 NA non-coding upstream 136503 20121770 ~ 20180561 (-)
G323709 NA non-coding upstream 143986 20129253 ~ 20185132 (-)
LOC117599978 NA non-coding upstream 385297 20370564 ~ 20376314 (-)
G323773 NA non-coding upstream 403974 20389241 ~ 20436040 (-)
G323781 NA non-coding upstream 432343 20417610 ~ 20442372 (-)
kdm4ab kdm4a,kdm4ab,LOC108280529,LOC107564389,LOC107684932,LOC107700543,LOC107551714,LOC107743373 other downstream 401912 19476112 ~ 19507197 (-)
G323011 rpl5,rpl5a,LOC102781853,LOC108436062,LOC101160347,LOC103149531,LOC106904255,LOC105920466,LOC106958298 other downstream 831192 19075000 ~ 19077917 (-)
tceanc2 tceanc2 other downstream 902730 19003239 ~ 19006379 (-)
mrpl37 mrpl37 other downstream 914473 18985173 ~ 18994636 (-)
G322826 NA other downstream 1153516 18753772 ~ 18755593 (-)
G323726 NA other upstream 210027 20195294 ~ 20195672 (-)
LOC113546371 NA other upstream 398934 20384201 ~ 20411806 (-)
LOC113546455 atr,LOC104958464,LOC107677746,LOC107700496,LOC107576458 other upstream 476748 20462015 ~ 20469569 (-)
sh3glb1b sh3glb1,LOC108280317,LOC107700566,LOC107677816,LOC107732941,LOC108414852,LOC107553268,LOC102780267,LOC107382675,LOC103377018 other upstream 681024 20666291 ~ 20714017 (-)
G323902 NA other upstream 842759 20828026 ~ 20830104 (-)

Expression


Co-expression Network