kncn (kncn,LOC107700491,LOC107710543)


Basic Information

Item Value
gene id kncn
gene name kncn,LOC107700491,LOC107710543
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 20111370 ~ 20121708 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026946370.2
gtgtgtgtgtgtgaatgaacacGGTCAGTATTGGGGAGTACCATGGGCTGCGGGTGGGCTCGGCCCTCCTCAGTATCGTATCCGGCTGCATCATCATCGGCGTGTCTAAAGACTGTGACGCAGATGCCGTGGGGGGAATTTTCCTCGGAGCAGGAGGACTCGGTCTCCTGATCTCCATTTATCCGTTTATCAAAGCCTGGTTCAACATCCATCACATTTTACCCAACATCGGAAACTTCAGAGTCCAACCTATGGCTCCAACGCCGGCCCCTGAACAGCCCTCTGACTCTCTCAGAAGAGAAGGGACTCTGGGTCAGCTGGAGCGCTCGAAGAGCCGCATGGGGACGTTCGTGGAGGCGGGAGCTGCTGCCGCTGAGGGCTCGCAGGAAGACGGACCCTCTACAGATGTTCCAGATATTTTGGGCAGGCGTAAACCCAAACTCTCAGAGGTGGACCTTCCATAAACATCTAAAGCTCAAACCATCGACTGTGTGAAAGAACAGAGAGAATTATAATATAAGTTAGACTCAGGCCTACAATTAATATCTGTGTTTGCGAGTGGAAGAAACATGAATGAGTTACGTATTTTACTAGTATGAACATTAGGACCATGAGATGTGTCTTCCCTCCTGTTGTGTATCATCGCCCCAGGCCGTCTCTTTAGACTCCAGATCAAATGCAAATgcgacatttatttaaaaatctccaATATGTCTCATTTCCATTTCAGTGATGATCAATATATACGCAATCCTGATGGaagatttaaaacaaatcattttgacTCAGGCGGAACAGAATGATTGAGGACTTTAATAgcttttaaatgtgtgtttaaatgctaaaaatgctaaattctGGAGCATGAGTAAAATTTGGATGACTACAAATCATTTGAAgtcatttgtaatttaaaatgtttctggaTGATTCTATG

Function

symbol description
kncn Orthologous to human KNCN (kinocilin).

NR:

description
kinocilin

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026946370.2 True 937 mRNA 0.45 5 20111370 20121708

Neighbor

gene id symbol gene type direction distance location
tmem275 LOC108280259 coding downstream 479 20105972 ~ 20110891 (-)
pbx1a pbx1a,LOC103479586,LOC104918287,LOC103143038,LOC107083372,LOC103396165,LOC101069707,LOC108438878,LOC100704482,LOC108280905,LOC106929027,LOC107732204 coding downstream 126103 19909109 ~ 19985267 (-)
ptprfb ptprfb,LOC108280478 coding downstream 442475 19512722 ~ 19668895 (-)
st3gal3b LOC108280530 coding downstream 654955 19393253 ~ 19456415 (-)
LOC113546452 LOC108280527 coding downstream 727053 19364746 ~ 19384317 (-)
cdc20 cdc20,LOC107732200,LOC107553255,LOC107700550,LOC107563294,LOC107710546,LOC107677877 coding upstream 29309 20151017 ~ 20157238 (-)
zfyve9a zfyve9,LOC108280307 coding upstream 64330 20186038 ~ 20211147 (-)
thpo LOC108280322 coding upstream 89991 20211699 ~ 20218591 (-)
fam131a fam131a,LOC108280319,LOC106961227,LOC107570263 coding upstream 163148 20284856 ~ 20300145 (-)
eif4g1a LOC108280304,LOC108280982,LOC108442892 coding upstream 180892 20302600 ~ 20335715 (-)
LOC117599996 NA non-coding downstream 294305 19815214 ~ 19817065 (-)
LOC117599987 NA non-coding downstream 297159 19810468 ~ 19814211 (-)
G323327 NA non-coding downstream 509034 19602109 ~ 19602336 (-)
G323308 NA non-coding downstream 617640 19438223 ~ 19493730 (-)
G323303 NA non-coding downstream 720013 19391157 ~ 19391357 (-)
G323706 NA non-coding upstream 62 20121770 ~ 20180561 (-)
G323709 NA non-coding upstream 7545 20129253 ~ 20185132 (-)
LOC117599978 NA non-coding upstream 248856 20370564 ~ 20376314 (-)
G323773 NA non-coding upstream 267533 20389241 ~ 20436040 (-)
G323781 NA non-coding upstream 295902 20417610 ~ 20442372 (-)
kdm4ab kdm4a,kdm4ab,LOC108280529,LOC107564389,LOC107684932,LOC107700543,LOC107551714,LOC107743373 other downstream 604173 19476112 ~ 19507197 (-)
G323011 rpl5,rpl5a,LOC102781853,LOC108436062,LOC101160347,LOC103149531,LOC106904255,LOC105920466,LOC106958298 other downstream 1033453 19075000 ~ 19077917 (-)
tceanc2 tceanc2 other downstream 1104991 19003239 ~ 19006379 (-)
mrpl37 mrpl37 other downstream 1116734 18985173 ~ 18994636 (-)
G322826 NA other downstream 1355777 18753772 ~ 18755593 (-)
G323726 NA other upstream 73586 20195294 ~ 20195672 (-)
LOC113546371 NA other upstream 262493 20384201 ~ 20411806 (-)
LOC113546455 atr,LOC104958464,LOC107677746,LOC107700496,LOC107576458 other upstream 340307 20462015 ~ 20469569 (-)
sh3glb1b sh3glb1,LOC108280317,LOC107700566,LOC107677816,LOC107732941,LOC108414852,LOC107553268,LOC102780267,LOC107382675,LOC103377018 other upstream 544583 20666291 ~ 20714017 (-)
G323902 NA other upstream 706318 20828026 ~ 20830104 (-)

Expression


Co-expression Network