LOC113546473


Basic Information

Item Value
gene id LOC113546473
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 19190314 ~ 19197494 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026946371.2
TCAGCCAGTTCCAATAAAAGCTGAAAGCAGTCCTCCCCAGCGCAGCACTCCTGACAGGGAAGGCTGAGAGATGGGTCGCTGTTCCTAATGCTGGTAAATCCTTAAACACTCAGATAGAAACTGGGTTCATTCGTCATTTATACACACCAGTGAATTTTAGGATGACTGTTACACCGATTTGACCTGATGCCAAGTGCAAACTGCAAAGATAATGGGTGCCTTAGTTATAATCCTGCAAGCAATCCTACTTCTCTCCAGTTTTGGCTTCACTGAATCTTCTGAGCTTCTGCAATGCTTTAACGATTATGACACCGAGCTAAAGTGCAGTTTGACCTTGGCTGAACCTAACAGTTGTTCTGAAAACCAACTCAGTGCTTCAGTATACAGCAGATTGTTTACATGCCATTTTGATGAAATCCGTCCTGGTGCATGTGAATGCAGAATCCAGGTGCAAGGGTTTGTTCTGAGAGAGATATTCACAGTAAATGTGCTGAAAGGAAACAAGGCTTGGCACACAGACAATATCAGCACTGAAGCAAGCATTAAGCCTAGAAGACCAATCATCACGTCAGTCATTCAGAAGACAAATGGAGACTTTCTCATCACCTTGAACACCACCTACATACAGAAAACGTTTTCTGAATCCCTGGTGGTGGAGCTCCAATATGGCATTGATGGAAGCAATGATTATGTGACACAGCTTTTGAGAAACGGTCAAACTGCATATGAGCTTGTGGGCAGAAACCTTCAACCTAATTCCAAATATATTTTGAGAGCGAGAGTGAAATCAAACTACCCACCTAATAAGACATTCAGTGAATACAGTGAAGCACATGTGTTCAAGACACCACAATCATTACAAAACCTTCTCAAAATAATAATCCCCATATTATGTCTCATTCTGATCATTTGTATATCTTCAATCTACTTCTGGTTCAACAGAATCCTAAAACCATGGTGGGACAAGATTCCTACTCCCAAATTTTCTACGAATTTTGTAAAACAGGTCCCACAGTTACTGTTACTTCAAACGGAGTTCTCGTCTGTCAGTCTTGATTCAACAGCAAACCACAACGCCAAGAAGATATGTGTGGAATCTTCTCAAGTCCAGGGTGAAGACAGTCACTGTAGTCTCAGTCTGGGGAAAGGTGTCGATTCAGCGCCACTGATTTACTCCACGACAGCCTACGAGAGAGTGGACGAGAACAGCTCTGAAGGTGTTCGGTTTGAGCTTGAAAAGGGACACCAATCTGCAAACGCCAACCAAGTATATGAAAATCAGCAGTCAAATGAATTCAGCTCAGGAATCAAAAATAGGTCCTATTCGCAATCAAACTCTAGCGGCTCATCCTTTTTTAATCATCCAGTTTTTCCGAGTGAGAACGTCCTGGTGCTGCCGAAGCACCTGGACCCAATGATACAGACAGATTTTGAGTACAGCGTGTGGAATGGTTGTACAGACTCTGGAAACTCTACACTGATTCACATCACACCCCCCAACAATGAGACGGCTGTGGTTCTCGGATATCAGAGCATCGGTGACCACGATGCTCTTAGCACTTGTAACGATCCAATCACAGAGGAGCCATTTAGCATCAAGAAACCACAGGATGTTCTGATTTCTGTCCATGATAGCATCATTATGCCAGTGGAGGAAGGGTACCAAGCTTTTCCAAGTGTTGCCTGAAACACTGGAGAATGGAAGAACTACAAAGTTAGAATTAGATTAGAACGTCTCTCAGGGCAATATTACGGCAAATGGTCATTTCTCATTTTGCATATCTTTCCAGGCATTCAAATGGACTCGAGGTTTGATGTGACATCTTCGGGTAGAACTTccttatgtatatttatatgtcaATTTCACGTCAAATTCCTTGGTATTTGATATGCAGTAGTGCTACACTATGCATTTGTGTTGCATATACCATGAAGATGAACATCACTAGGAAGCAAAATCATAATTCTCTCTTAAACTTAAATGTTTTGGATGTCCTTTTGTTATTTAGTTACCCACTGTATCGTTACTTCAAGCTGATGTTTAGCTTGAATTTATGCTGTTGTTTTCCCCAATTTAAGCTTTTAACGCACATCTCAAATCCTCTATATACACTAAATACATAAAGCTGCTCTATATAGCTGCACTGAGCTACAGGAAAACGCTGACTCCAAAAAGCATGTTGGAAATTCTACATGAAAGTTCAGTGCCATAGAGCCAAAATGTTTCTTAACAGACTTACATTAGAGGTCTTAAACATTCAAATATGCATTCATGTGCAAATTTCTGAAAATTCTGTGAAATTCATTCTGACACTTtcattatttacagtttttcatttagtgcaagtataataaaatgttactaaGGTTTAAGACAGATGTTCTGTACTGCTATACATCTCTGTGaatatgtttacattattatataaagtCTCGGGGGTTTGAACAGTCA
>XM_026946372.2
TTCAGCCAGTTCCAATAAAAGCTGAAAGCAGTCCTCCCCAGCGCAGCACTCCTGACAGGGAAGGCTGAGAGATGGGTCGCTGTTCCTAATGCTGGTAAATCCTTAAACACTCAGATAGAAACTGGGTTCATTCGTCATTTATACACACCAGTGAATTTTAGGATGACTGTTACACCGATTTGACCTGATGCCAAGTGCAAACTGCAAAGAATAGATAATGGGTGCCTTAGTTATAATCCTGCAAGCAATCCTACTTCTCTCCAGTTTTGGCTTCACTGAATCTTCTGAGCTTCTGCAATGCTTTAACGATTATGACACCGAGCTAAAGTGCAGTTTGACCTTGGCTGAACCTAACAGTTGTTCTGAAAACCAACTCAGTGCTTCAGTATACAGCAGATTGTTTACATGCCATTTTGATGAAATCCGTCCTGGTGCATGTGAATGCAGAATCCAGGTGCAAGGGTTTGTTCTGAGAGAGATATTCACAGTAAATGTGCTGAAAGGAAACAAGGCTTGGCACACAGACAATATCAGCACTGAAGCAAGCATTAAGCCTAGAAGACCAATCATCACGTCAGTCATTCAGAAGACAAATGGAGACTTTCTCATCACCTTGAACACCACCTACATACAGAAAACGTTTTCTGAATCCCTGGTGGTGGAGCTCCAATATGGCATTGATGGAAGCAATGATTATGTGACACAGCTTTTGAGAAACGGTCAAACTGCATATGAGCTTGTGGGCAGAAACCTTCAACCTAATTCCAAATATATTTTGAGAGCGAGAGTGAAATCAAACTACCCACCTAATAAGACATTCAGTGAATACAGTGAAGCACATGTGTTCAAGACACCACAATCATTACAAAACCTTCTCAAAATAATAATCCCCATATTATGTCTCATTCTGATCATTTGTATATCTTCAATCTACTTCTGGTTCAACAGAATCCTAAAACCATGGTGGGACAAGATTCCTACTCCCAAATTTTCTACGAATTTTGTAAAACAGGTCCCACAGTTACTGTTACTTCAAACGGAGTTCTCGTCTGTCAGTCTTGATTCAACAGCAAACCACAACGCCAAGAAGATATGTGTGGAATCTTCTCAAGTCCAGGGTGAAGACAGTCACTGTAGTCTCAGTCTGGGGAAAGGTGTCGATTCAGCGCCACTGATTTACTCCACGACAGCCTACGAGAGAGTGGACGAGAACAGCTCTGAAGGTGTTCGGTTTGAGCTTGAAAAGGGACACCAATCTGCAAACGCCAACCAAGTATATGAAAATCAGCAGTCAAATGAATTCAGCTCAGGAATCAAAAATAGGTCCTATTCGCAATCAAACTCTAGCGGCTCATCCTTTTTTAATCATCCAGTTTTTCCGAGTGAGAACGTCCTGGTGCTGCCGAAGCACCTGGACCCAATGATACAGACAGATTTTGAGTACAGCGTGTGGAATGGTTGTACAGACTCTGGAAACTCTACACTGATTCACATCACACCCCCCAACAATGAGACGGCTGTGGTTCTCGGATATCAGAGCATCGGTGACCACGATGCTCTTAGCACTTGTAACGATCCAATCACAGAGGAGCCATTTAGCATCAAGAAACCACAGGATGTTCTGATTTCTGTCCATGATAGCATCATTATGCCAGTGGAGGAAGGGTACCAAGCTTTTCCAAGTGTTGCCTGAAACACTGGAGAATGGAAGAACTACAAAGTTAGAATTAGATTAGAACGTCTCTCAGGGCAATATTACGGCAAATGGTCATTTCTCATTTTGCATATCTTTCCAGGCATTCAAATGGACTCGAGGTTTGATGTGACATCTTCGGGTAGAACTTccttatgtatatttatatgtcaATTTCACGTCAAATTCCTTGGTATTTGATATGCAGTAGTGCTACACTATGCATTTGTGTTGCATATACCATGAAGATGAACATCACTAGGAAGCAAAATCATAATTCTCTCTTAAACTTAAATGTTTTGGATGTCCTTTTGTTATTTAGTTACCCACTGTATCGTTACTTCAAGCTGATGTTTAGCTTGAATTTATGCTGTTGTTTTCCCCAATTTAAGCTTTTAACGCACATCTCAAATCCTCTATATACACTAAATACATAAAGCTGCTCTATATAGCTGCACTGAGCTACAGGAAAACGCTGACTCCAAAAAGCATGTTGGAAATTCTACATGAAAGTTCAGTGCCATAGAGCCAAAATGTTTCTTAACAGACTTACATTAGAGGTCTTAAACATTCAAATATGCATTCATGTGCAAATTTCTGAAAATTCTGTGAAATTCATTCTGACACTTtcattatttacagtttttcatttagtgcaagtataataaaatgttactaaGGTTTAAGACAGATGTTCTGTACTGCTATACATCTCTGTGaatatgtttacattattatataaagtCTCGGGGGTTTGAACAGTCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026946371.2 False 2452 mRNA 0.40 10 19190314 19197493
XM_026946372.2 True 2458 mRNA 0.40 10 19190314 19197494

Neighbor

gene id symbol gene type direction distance location
dipk1aa LOC108280758,LOC108436064 coding downstream 98625 19078723 ~ 19091689 (-)
gfi1aa LOC108280759 coding downstream 137172 19043896 ~ 19053142 (-)
glmna glmn coding downstream 162431 19016482 ~ 19027883 (-)
acot11a acot11 coding downstream 240998 18936784 ~ 18949316 (-)
tyw3 tyw3 coding downstream 272150 18914202 ~ 18918164 (-)
gadd45aa gadd45a,gadd45aa,LOC108280806,LOC107716939,LOC107743369,LOC107700510,LOC107684937 coding upstream 29256 19226750 ~ 19229596 (-)
nsun4 nsun4 coding upstream 112656 19310150 ~ 19313674 (-)
pif1 pif1,LOC107551719,LOC104945614,LOC107700539 coding upstream 119144 19316638 ~ 19330869 (-)
LOC113546452 LOC108280527 coding upstream 167252 19364746 ~ 19384317 (-)
st3gal3b LOC108280530 coding upstream 195759 19393253 ~ 19456415 (-)
G323007 NA non-coding downstream 123566 19055487 ~ 19066748 (-)
G322889 NA non-coding downstream 233697 18942578 ~ 18956617 (-)
G322849 NA non-coding downstream 377937 18812010 ~ 18812377 (-)
G322831 NA non-coding downstream 425315 18764759 ~ 18764999 (-)
G322827 NA non-coding downstream 433667 18756373 ~ 18756647 (-)
LOC117600001 NA non-coding upstream 566 19198060 ~ 19204380 (-)
G323088 NA non-coding upstream 20349 19217843 ~ 19220218 (-)
LOC117599938 NA non-coding upstream 32860 19230354 ~ 19275396 (-)
G323092 NA non-coding upstream 117017 19314511 ~ 19315470 (-)
G323298 NA non-coding upstream 188737 19386231 ~ 19386432 (-)
G323011 rpl5,rpl5a,LOC102781853,LOC108436062,LOC101160347,LOC103149531,LOC106904255,LOC105920466,LOC106958298 other downstream 112397 19075000 ~ 19077917 (-)
tceanc2 tceanc2 other downstream 183935 19003239 ~ 19006379 (-)
mrpl37 mrpl37 other downstream 195678 18985173 ~ 18994636 (-)
G322826 NA other downstream 434721 18753772 ~ 18755593 (-)
G322538 NA other downstream 795491 18394249 ~ 18394823 (-)
kdm4ab kdm4a,kdm4ab,LOC108280529,LOC107564389,LOC107684932,LOC107700543,LOC107551714,LOC107743373 other upstream 278618 19476112 ~ 19507197 (-)
G323726 NA other upstream 997800 20195294 ~ 20195672 (-)
LOC113546371 NA other upstream 1186707 20384201 ~ 20411806 (-)
LOC113546455 atr,LOC104958464,LOC107677746,LOC107700496,LOC107576458 other upstream 1264521 20462015 ~ 20469569 (-)
sh3glb1b sh3glb1,LOC108280317,LOC107700566,LOC107677816,LOC107732941,LOC108414852,LOC107553268,LOC102780267,LOC107382675,LOC103377018 other upstream 1468797 20666291 ~ 20714017 (-)

Expression


Co-expression Network