LOC113533522


Basic Information

Item Value
gene id LOC113533522
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 12416510 ~ 12428531 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034297705.1
atgGAGGACATACCTAAGATGGTGGAGCTGTACCAGTGTCCACAGTTCGGTGATGTTCCAGTAACTCTGCCACACAATACTGCATACAGAGCCATCGTCACACGTGTCATACAGGCACAGCGCCACCTAGTGCACAAGCCCATCTTAAAGGCTGTCTTCCATAACattctctcttcctccaccaTGGAACGCTTCGTCATCAATTCGTTCTGGTGGCTCTTCCTGGAGAACTTTcagccCGACAGGAAAGCTCAGGATCGACTGTTTGGCCGGATTGCAGAGAATTACATCAGCATTCTGACCCAGAGCTCGCTGTCCTCTAACAGTGGCACCATCTTCCTTCCGGTGGATCATGCTGTTTTCCGTGATCCAGCCTTCCTCACAGCTCTGTGCTCCACCGCCTACCAGTGGATCGGAGggCTCTGTCCTGCTCCTGAAGTCTACAAGCAATGGGACTTTGAAGCTCTGGAGGCAAACGAGACCAGCAGCAttttacagagagaaaaaaaagaggagagtgactCATCACTGACTTCTATCGACAGTGTGTTTTCTTGCATCTTCTTTTCTGAACCCTCCGGCAGCCTCACAGCTGTAAAAAAGAAGAGAATGAAGAGTCCGTGTGAGGTGAGTCAGGCCATTGCATTGTACTCCAAGAACAAGCTCACTACTACAAGCCACACAAGCACTAGTGAGGTGGagaaagcagcttcacagaacaTCCCAGGATCTGATCTAAAAGCTCTTACTGAGCACAGAAACCACACCTCAGCTAGAGAGTCACATGCAGTGGATGGACATATAGAggtgaagcagtgtgtgtttaacgTGTGGGGAAACTCTCCTCTGGTGCAGCACTACATGAACACACTGCGTCTGCAGCGTAATGTGGGTTACAACGTTCTAGTAAGGAGAACCCAGATCCGAGCACTGCCTCAGGCAGACTCGCTTACTTACCGAGATGTTTTGAGGCAGACAGCCTGCCAGCGGAGGGAACTGCGCTCTCTCTGGGCACGACACAGACAGGAAATAAGCAGCATGCAGCAGAAGCGGGAAGACGAACAAAATCAGCTCCTCAGaaaacacaagaaaatCCTGTCTCAGAGAAACGTGGTACACAAACTCTGCCAGCTGCTAGTGCCACCAGCCAAGgGTGAAGAGGAAAGCAAAATACACTCTGAACAGTTGCTTGCATTTAGCACCATAATAACTGGAATtgaataacacacactgcatgcacTGCATCTAGAgtgtacacagtgaaatgtcatGTGACATTAAAACCAGAATGTGTTGGTTGCACACTTATCTCATTAGATGAGCTCATTGAAGCAGAAACGAGTGAAATGTTCATCTCATCTCTTTAATCATCATGGTTTCATGATTACAAATTCATAAGAATCTACACAAGCTTTCTCATATAAATGTATAGGATTATGGTCAGTGCTCATAGATATTCATTTAATTGAATTTGAGGTTTATATGACAACAGGACTGCAATAGTAGGACTGCAATACTGTGAACAAGCACTAGATGACAGTACAGGCTTTGACTTTAATATAACTGCTCTCTCCACTTCTCTGTTCTCTGCATAGTCTGAGGTTACACAGGAACAACACTTCATAGCAATAAGAGCTACTTTCAAATTCCTGGTCAAATTGAACTGTTTTATAGTTTGGGTCATACTGTTCAGATTTCCTATGTGTCCAGGAACATCTGGAAAACCTGAAAATTTTGGACGAGTCCTCTAAAAatggaaaacaggaaaaatgtgaaaatatcgTGAAAATATTACTGAGGTCCTGCAACCAGGTAAACGCAAGTTTGATCATAAATCAAGGAGTCAAGTTAGTCCTAACCCATACACTGAGAGGAGAAGAGTATGCTATCTGATatgcactatatgtccaaaagtatatggacacctaaccatcacaaccatatgtaggtcttccctaaactgttgccacaaatttgtacctgagactacttttttttttttttt

Function

GO:

id name namespace
GO:0016769 transferase activity, transferring nitrogenous groups molecular_function
GO:0008483 transaminase activity molecular_function

KEGG:

id description
ko04113 Meiosis - yeast

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034297705.1 True 2005 mRNA 0.44 13 12416510 12428531

Neighbor

gene id symbol gene type direction distance location
pax3a pax3a,LOC108280216,LOC108439877 coding upstream 793665 11596699 ~ 11622845 (+)
trnag-ccc_6 NA coding upstream 843613 11572827 ~ 11572897 (+)
trnai-aau_17 NA coding upstream 867322 11549115 ~ 11549188 (+)
trnap-agg_14 NA coding upstream 868331 11548108 ~ 11548179 (+)
snorc c20h2orf82 coding upstream 871785 11535133 ~ 11544725 (+)
LOC113533470 NA coding downstream 354006 12782537 ~ 12796824 (+)
LOC113533117 LOC108280188,LOC108433071 coding downstream 539783 12968314 ~ 12982849 (+)
abhd17aa abhd17aa,LOC108280794,LOC108433103,LOC105904035,LOC107757810,LOC107698472,LOC107599293,LOC107600230,LOC106584389 coding downstream 576263 13004794 ~ 13014554 (+)
rorcb rorcb,LOC108280913,LOC108433101,LOC107757806,LOC107698501 coding downstream 757400 13185931 ~ 13216057 (+)
sh3gl1a sh3g1,LOC108433099 coding downstream 788959 13217490 ~ 13241937 (+)
G318725 NA non-coding upstream 344323 12063884 ~ 12072187 (+)
G318697 NA non-coding upstream 391067 12025208 ~ 12025443 (+)
G318683 NA non-coding upstream 545544 11870767 ~ 11870966 (+)
LOC117599957 NA non-coding upstream 570099 11833308 ~ 11846411 (+)
G318658 NA non-coding upstream 617329 11798958 ~ 11799181 (+)
LOC117599989 NA non-coding downstream 130982 12559513 ~ 12572407 (+)
LOC117599992 NA non-coding downstream 193768 12622299 ~ 12625754 (+)
G319087 NA non-coding downstream 199144 12627675 ~ 12627890 (+)
LOC117599962 NA non-coding downstream 333305 12761836 ~ 12763727 (+)
G319198 NA non-coding downstream 376991 12805522 ~ 12805732 (+)
G318439 NA other upstream 947011 11467299 ~ 11469499 (+)
per2 LOC108280459,LOC108439864 other upstream 951741 11399884 ~ 11464769 (+)
camk2n1a camk2n2,camk2n1a,LOC107659987,LOC107600060,LOC107557885 other upstream 1682422 10730346 ~ 10734088 (+)
eif4e2 eif4e2,LOC107600102,LOC107579667,LOC107749152,LOC107730458 other upstream 1847603 10563821 ~ 10568907 (+)
capn10 capn10 other upstream 1853516 10536431 ~ 10562994 (+)
G319170 NA other downstream 336524 12765055 ~ 12803019 (+)
sema6ba si:ch211-168n16.1,LOC108280795,LOC108433102,LOC107713651,LOC107600229,LOC107757803,LOC107662975,LOC107698499,LOC105903857 other downstream 592611 13021142 ~ 13154527 (+)
LOC113533270 mtcl1 other downstream 1408902 13837433 ~ 13897914 (+)
zmp:0000000521 zmp:0000000521,LOC108280721,LOC107696078,LOC108442439,LOC107596226,LOC105888700 other downstream 1651718 14080249 ~ 14127012 (+)
rab31 rab31 other downstream 1957707 14386238 ~ 14466753 (+)

Expression


Co-expression Network