LOC117595732


Basic Information

Item Value
gene id LOC117595732
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 12756704 ~ 12757144 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034297707.1
AGTTTAGAAAATGTTTGCCATACATGGGACTGTAACAGCTAAGTCTAAGAAGAAAAATGGACCAGGCTGCATTTTTCCTAATACTGCTCTCAGGAACCTTTGACATCTCTTCTTCTATGTCACGCCAGTACTACTATGTGAATGAAAATAAGACATGGCAAGAAGCTCAGAGCTACTGCAGAGCGAATTACATTGACCTGGCTACAGCAAACAGCATGGAAGAGGTAAACAGTATGAATGAAAGTGTGAAATCAGTGGATCCTGGGTATGGTGGTGCTGTGTGGATTGGACTCAAAAGGAGCTGGGCCTGGTCTACAGGAGACTCTCTCAACTACAACTAT

Function

GO: NA

KEGG:

id description
ko00040 Pentose and glucuronate interconversions
ko00340 Histidine metabolism

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034297707.1 True 341 mRNA 0.43 2 12756704 12757144

Neighbor

gene id symbol gene type direction distance location
LOC113533469 NA coding downstream 2452 12752650 ~ 12754252 (-)
LOC117595730 NA coding downstream 30210 12724934 ~ 12726494 (-)
gpc5c LOC108280917 coding downstream 33940 12635057 ~ 12722764 (-)
gpc1b LOC108280809 coding downstream 233687 12436703 ~ 12523017 (-)
LOC113533285 ephb1,LOC108430182,LOC107549839,LOC107671589 coding downstream 393111 12063866 ~ 12363593 (-)
LOC113533584 LOC108280423,LOC108280624 coding upstream 62927 12820071 ~ 12832529 (-)
LOC113533473 LOC108280623,LOC108280423 coding upstream 77530 12834674 ~ 12840013 (-)
svilb LOC108280625 coding upstream 86936 12844080 ~ 12905436 (-)
kcnj9 kcnj9,LOC108280861,LOC108433105,LOC107698496,LOC107713649,LOC107600231,LOC107757805,LOC107599257 coding upstream 183384 12940528 ~ 12964781 (-)
cdc34b ub2r1,cdc34b,LOC108280790,LOC108433104,LOC105020474 coding upstream 229118 12986262 ~ 12999987 (-)
G319163 NA non-coding downstream 107818 12633893 ~ 12648886 (-)
G319059 NA non-coding downstream 172615 12583865 ~ 12584089 (-)
G318660 NA non-coding downstream 954842 11801647 ~ 11801862 (-)
G318639 NA non-coding downstream 1063370 11689489 ~ 11693334 (-)
LOC117599995 NA non-coding downstream 1124783 11629570 ~ 11631921 (-)
G319182 NA non-coding upstream 7110 12764254 ~ 12765991 (-)
G319186 NA non-coding upstream 15505 12772649 ~ 12796934 (-)
G319429 NA non-coding upstream 54171 12811315 ~ 12856578 (-)
G319467 NA non-coding upstream 232157 12989301 ~ 13021880 (-)
G319474 NA non-coding upstream 271965 13029109 ~ 13029704 (-)
wu:fb63a08 LOC108280878 other downstream 1050827 11619876 ~ 11705877 (-)
ccl20a.3 LOC108261059 other downstream 2228425 10527282 ~ 10528279 (-)
LOC113542985 crem,crema,LOC108439856,LOC100534480,LOC107659668,LOC107563815 other downstream 3783429 8969204 ~ 8973275 (-)
pitrm1 pitrm1,LOC107698483,LOC107679400 other downstream 3802594 8903824 ~ 8954110 (-)
G317176 NA other downstream 3870995 8883649 ~ 8885709 (-)
LOC113533649 LOC108280860,LOC108433106 other upstream 151309 12908453 ~ 12928071 (-)
ccl25a NA other upstream 855372 13612516 ~ 13615743 (-)
LOC113533556 LOC108280202 other upstream 908037 13665181 ~ 13680110 (-)
theg NA other upstream 1974590 14731734 ~ 14745487 (-)
LOC113533479 LOC108280451 other upstream 2465634 15222778 ~ 15231580 (-)

Expression


Co-expression Network