col11a1b (col11a1b,LOC107594685,LOC107680048,LOC107700498,LOC107564536,LOC107710593,LOC104931259)


Basic Information

Item Value
gene id col11a1b
gene name col11a1b,LOC107594685,LOC107680048,LOC107700498,LOC107564536,LOC107710593,LOC104931259
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 20807627 ~ 20883606 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034297735.1
tttttttcatgcacacgcacacacacacacacacacagacacacgcacgcgcgcggtcacacacacacacacacacacaccttcagggCTGAGGAGCTGCTGAGTCTCTGCTCCATATCCTCTGTGTATCTGAGTGAGCTGGTGATGATGGCAGAGCAGAAATAAGCGCAGAGAGCGGGACTGAGGAAGCGCAGCGGCAGACGGCGGGATGATGGATGCGCACAGCTGCAGGACGCGAAAGTGGCTTTGGCATCGCGGTGTATCGATTCTCCTCACCGTATCGGTGTTCCTGCAGACAGCGTGTGTCAGAGCAGCTGAGCCGGTGGACGTGCTGAAGGTTTTGGACTTTCGCAGTTCTCCAGAGGGAATAACGAAAACGCAGGGCCTGTGTCCTGTCAGGAGAGGATCCAAACCCGATGTGGCGTACAGAGTGGACAAAACGGCGCAGATCAGCGCTGCAACGAAAAAACTCTTTCCAGCTGGAGTATTTCCTGAAGATTTCTCCATCCTCATGACCATAAAGCCCAAAGCTGGAACTCAGGCCTTCCTCTTATCAGTGTATAATGATAAGGGACTGCAGCAGCTCGGCGTGGAGATCGGACGCACTCCAATCTTCCTGTACGAAGATCAGCACGGAAAACCCACGCCTGAAAATTATCCGTTATTCCGAAACATTAACCTCTCCGATGGAAAGTGGCACCGTGTGGCGATCAGCGTGGAGAAGAAATCCATCACCATGATCGTCGACTGTAAGAAGAAAATCTCAAAGCCTCTGAGCAGAAGTAATAAACCTGTAATCAGCACCGACGGCATCACGGTGTTCGGCACCAGGATCCTGGATGAGGAGGTTTTTGAGGGAGATATCCAGCAGCTGCTGCTGGTCGAAGACGCTCGAGCTGCGTACGATTACTGCGAACATTACAGTCCCGAGTGTGGAACGCCGCATCAGGAAACACCGCAGGCTCAGGAACCCGAGGAGGAGTACAACACTGAATATACAGATTATTACGACTACACAGAGGGAGAACTCGCACCTACCGAGGCTCCTGTCGAGGAGACTAAAACTGACGCCAAGCCCAGCACAGGGGACGTGGAGTACTACACCGAGACGGAGCTGGATTATGGCACTGTGGACGGATCCGAACCCCAAACCACCACATCATCACCTGTTAAAACTGAgGATGTGGTGTATGAGGAGGAGATTGTGGATGATTACATCACCGGGGTGGAGCAGGTGGGCGTGGACTCGCCTTCCGCGCCTGTGGAAACCAAACCCGTGGAGACGGTAGAGAGTGACATCACATCCTTCAAAGAGTACGACATGGGCGAGTTTGAGACGAAGGAAGTGGACCCGAGTCACTACGACGACGGTTTCTATGACTACGGGACGATAGCCCCAGGCCCTGACCCCGCCCAGGAGCACGAGGTGGAGATGCCGGCAGAGACCGGCCAATCAGAGGGCaggacTGCTGGTGGTTATGGAGGTGAGAAAGGACAGAAAGGAGAACCTGCTGTCATTGAAccgGGAATGCTAATAGAGGGACCACAAGGATCACCGGGACCCGCGggtcTTCCCGGCTCTCCGGGTGTTCAGGGTTCTCCCGGTCTCCGTGGTGATCCTGGTGACAAAgGTCCTCCTGGTCGTCCTGGTCTCCCCGGTGCCGATGGAGCTCCTGGACCTTCAGGAACCGTCCTCATGCTCCCGttccGTGCAGGAGGTGAGGCCTCTAAAGGTCCGGTAGTGACGGCGCAGGAAGCTCAGGCTCAGGCCATCCTGGCTCAGGCTCGGCTGGCGATGAGGGGTCCACCCGGACCTGTGGGGTTAGCTGGCAGAGCTGGTGCTATGggtAGTCCTGGACCATCTGGTCTTAAAGGAGATAGCGGAGAATCTGGTCCAACTggtCCGAGAGGACTGCAGGGTCCCACAGGGCCTCCGGGGAAAGCAGGGAAGAGGGGTCGTTCAGGAGCTGATGGAGCGAGAGGAATGCCAGGAGAAGCGGGAGGAAAGGGAGATCGAGGCTTTGATGGCCTTCCGGGTTTACCTGGTGAGAAAGGCCACAGGggtgaGACTGGCCCGATCGGACCCCCGGGACCTCCTGGAGATGACGGGCCAAGGGGTGAGGATGGACAGATCGGACCGAGAGGACTGCAGGGAGAAAGTggTCCTAGAGGTTTACTCGGCCCGCGAGGATCTCCAGGTCCTAACGGTCAACGTGGTCTTCCTGGCCTGGACGGTCCGCCGGGTCCTAAAGGGAACATGGGACCACCAGGAGAAGGAGGACCACCCGGTCAACAGGGAGTCACTGGCCCACAgGGCTTACCGGGACCTCAGGGCCCAATCGGACCTCCTGGAGAAAAAGGTCCTTCTGGAAAACAGGGACTGCAGGGTTTATCTGGAGCCGACGGTCCTCCTGGTCATCCTGGGAAAGAGGGACCGGCGGGAGAGAAAGGATCTACTGGTCACCCCGGACCCCAGGGCTCCATCGGCTACCCCGGTCCACGAGGAGTCAAAgGAGCTGAAGGAGTTCGTGGGTTAAAAGGCGGTAAAGGAGAAAAGGGTGAAGATGGTTTCCCAGGGTTTAAAGGTGATATGGGACTCAAAGGGGACAAAggAGAGCCCGGAGTAATCGGACTGCGGGGAGAAGACGGACCGGAGGGACCGAAGGGAAAATCCGGACCAACTGGAGAATCTGGACCCATGGGACTGGCTGGAGAAAAGggtaaACTGGGAGTTCCTGGATTACCTGGATATCCTGGACGACAGGGTCCAAAGGGTTCTACTGGTTTCGCCGGTGCTGCTGGAGCCGGTGGAGAGAAAGGAACAAGGgGACTGGCTGGTAAAGCAGGGCCGAGGGGACAGCGCGGTCCgacgGGACCTCGTGGTAGCCGAGGAGCGAGAGGACCGACGGGAAAACCAGGAGCGAAGGGAACGTCGGGACACGACGGTGCTGCCGGAGGTCCTGGAGAACGAgGACCTCAAGGACCACAGGGGCCCGTTGGGTTGCCGGGACCTAAAGGTCCACCTGGACCCCCTGGTAAAGACGGACTGCCGGGACACCCAGGACAGCGAGGAGAAACCGGTTTCCAAGGGAAGACGGGTCCCCCTGGTCCTGGAGGAGTCGTGGGTCCGCAGGGTTCTACAGGAGAAACCGGACCTGTGGGTGAGAGAGGACACCCCGGATCCCCGGGACCGCCCGGAGAGCAAGGTCTTCCTGGAGCGGCGGGTAAAGAGGGTGGAaagGGCGACCCGGGCCCTCAGGGTCTTGCTGGAAAGCCCGGTCCTCCTGGTATCCGAGGTTTTCAGGGACAGAGAGGTCTTCCTGGAACtccaGGTCCAGGAGGTCTGAAAGGTGGTGAAGGTCCTCCTGGTCCACCGGGTCCCATCGGATCTCCAGGTGAGAGAGGAGGTGCTGGACCCGGCGGTCCGATCGGAGTACCGGGACGAAACGGACCTCAAGGACTCCCGGGACCTGCTGGAGAGAAAGGTGGTCCGGGTGAGAAAGGTCCTTCTGGACCCGCCGGCCGTGATGGTATTCAGGGTCCAGTCGGACTTCCTGGACCTGCAGGACCTCAGGGACCACCTGGAGAGGACGGTGATAAGGGAGAAGTCGGAGAACCGGGACAGAAGGGAAGCAAAGGGGACAAGGGTGAATCGggtcCTTCTGGTCCAGTTGGTCTTCAAGGTCCAGTTGGCAATCCAGGTCCTGCTggCACTGATGGTGAAGCTGGTCCACGAGGTCAGCAGGGAATGTTCGGCCAGAAAGGAGACGAAGGACCTCGAGGATTCCCCGGACTGCCAGGACCCGTCGGCCTACAGGGATTACCAGGACCTCCAGGCGAGAAGGGAGAGACTGGTGACGTCGGTGCGATGGGTCCTCCTGGTCCTCCAGGCCCGAGAGGTCCTCAGGGTCCCAGCGGAGCAGACGGTGCTCAGGGACCTCCTGGTGGTATCGGCTCTATGGGAGGAAACGGAGAAAAGGGTGAGCCGGGTGACGCGGGAAATCCAGGACCTCCCGGAGAGACCGGTTCaatggGTCTGAAAGGTGAAGTGGGTGAGAAAGGAGAGACGGGACCACCCGGAGCTGCCGGACCCGCAGGAGCACGAGGACCGCCTGGAGACGACGGTCCCAAAGGAAACcctGGACCTGCTGGCTTTCCTGGAGACCCCGGTCCTCCTGGTGAGCCCGGTGCTGCTGGACTCGACGGTCTTCCTGGAGATAAAGGAGAAAACGGAGAAGCCGGTCAGCAGggaCCCCCGGGTCCATCAGGTGAAGCTGGACCTCCTGGACCTCCAGGAAAGAGAGGTCCGATCGGACGGACAGGAGCCGAAGGCAAACAGGGAGAAAAAGGTTCTAAGGGTGAAGCCGGAGCTGAAGGACCATCCGGGAAAACCGGGCCTGTTGGACCTCAAGGGCCCCCTGGAAAGCCTGGTGCTGAGGGTCTGAGAGGAATTCCTGGTCCTGTAGGTGAACAAGGATCTCCTGGTGTAGGGGGTAAAGACGGTCCGCCGGGTCCACTGGGTCCTCCTGGGCTCCCCGGGTTGAAAGGTGACCCTGGTTCTAAAGGTGAAAAGGGTCATCCTGGTCTGATTGGTCTGATCGGGCCTCCAGGAGAACCAGGTGAGAAAGGAGACCGAGGTTTACCTGGATCTCAGGGAACAGCTGGAGGCAAAGGTGATCCTGGTGCTGTTGGTACTTCCGGTCCTCTTGGTCCTCCTGGTCCTCCTGGAATTCCTGGAGCCCAAGGACAAAAAGGATCTAAAGGAACGAGTGGTCCAGCGGGTCAGAAAGGAGAACCCGGTTTGATCGGCCCTCCTGGTCCTCCTGGTCCTCCAGGTGACATGATCCAGCCGCTGCCCATCCAGATGTCCAAGAAGTCGAAGCGTTCTTCAGACGTCCAGGCTGACGAGGCCATGCTGGATTACGGTTTAGAGGGAACGGAGGGAATGGATGAAGTCTACGGCTCGCTCAATAACCTGAAGCTGGACATCGAGCGTATGAAGTTCCCTCTGGGCACGCAGGACAATCCGGCCCGGACCTGTAAAGACCTGCAGCTCAGCCAGCCCGACTTCCCCGACGGTGAATATTGGATCGACCCTAACATGGGCTGTAAAGGAGACTCCTTTAAGGTTTACTGTAACTTTACAGCCGGAGGAGAGACGTGTATCTTTCCTGATAAAAAGTCCTCAGGGGTTAGAATATCCAACTGGCCGAAAGAGTCTCCAGGGACGTGGTTTAGCGAATTCAAGCGCGGTAAAATCCTCTCGTACGTGGATGTAGAGGAGAGTTCCATCAGCGGCGTCCAGATGACCTTCCTCAAGTTGCTGAGTTCTGCAGCGAGACAGAACTTCACCTACATCTGCCACCAATCCGTCGCCTGGTTCGATGCTAAAGCCGACAACTACAACAAAGCGCTGCGCTTCCTCGGCTCCAACGACGAAGAAATGTCACACGACAACAACCCCTTCATCAAGGCCGTGTACGACGCCTGCTCGGTAAGAACATCAGCGCCGGTTACCAGAGCAGCGTCTAAAATAAATCATCACTGGTTCTGCTGCTGGTGTCCACTAACAAAGTACAAGATCTTTACACTTTAA

Function

symbol description
col11a1b Predicted to be an extracellular matrix structural constituent. Predicted to be involved in extracellular matrix organization. Predicted to be located in extracellular region. Predicted to be part of collagen type XI trimer. Predicted to be active in extracellular matrix and extracellular space. Is expressed in several structures, including cranial cartilage; nervous system; neural crest; notochord; and otic vesicle. Human ortholog(s) of this gene implicated in Marshall syndrome; Stickler syndrome 2; autosomal dominant nonsyndromic deafness; and fibrochondrogenesis 1. Orthologous to human COL11A1 (collagen type XI alpha 1 chain).

NR:

description
PREDICTED: collagen alpha-1(XI) chain-like

GO:

id name namespace
GO:0005581 collagen trimer cellular_component
GO:0005201 extracellular matrix structural constituent molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034297735.1 True 5596 mRNA 0.58 66 20807627 20883606

Neighbor

gene id symbol gene type direction distance location
amer3 amer3 coding upstream 205096 20592866 ~ 20602531 (+)
atr atr,LOC107677746,LOC107700496 coding upstream 218169 20572562 ~ 20589458 (+)
spef2 spef2 coding upstream 235289 20532000 ~ 20572338 (+)
lifra LOC108255632 coding upstream 281705 20505684 ~ 20525922 (+)
zgc:110269 LOC108280318 coding upstream 330663 20469525 ~ 20476964 (+)
tecrl2b LOC108280320 coding downstream 2654 20886260 ~ 20892997 (+)
trnap-ugg_22 NA coding downstream 31798 20915404 ~ 20915475 (+)
LOC113524959 LOC108280417 coding downstream 97143 20980749 ~ 20991604 (+)
LOC117595742 LOC108280410 coding downstream 242267 21125873 ~ 21127829 (+)
G323578 NA non-coding upstream 102433 20672934 ~ 20705194 (+)
G323577 NA non-coding upstream 135173 20671728 ~ 20672454 (+)
G323576 NA non-coding upstream 137467 20669685 ~ 20670160 (+)
G323574 NA non-coding upstream 154266 20652233 ~ 20653361 (+)
G323553 NA non-coding upstream 203435 20528505 ~ 20604192 (+)
G323603 NA non-coding downstream 49626 20933232 ~ 20946079 (+)
G323624 NA non-coding downstream 83907 20967513 ~ 21024078 (+)
LOC117599988 NA non-coding downstream 140566 21024172 ~ 21024556 (+)
G323625 NA non-coding downstream 142815 21026421 ~ 21037720 (+)
G323643 NA non-coding downstream 143219 21026825 ~ 21089934 (+)
arhgef4 arhgef4,LOC107700563,LOC107710620,LOC107732940 other upstream 143808 20637584 ~ 20663819 (+)
G323534 NA other upstream 367066 20438702 ~ 20440561 (+)
clcn2a clcn2a,clcn2,LOC108280323,LOC107710554,LOC107732945 other upstream 526560 20129253 ~ 20281067 (+)
LOC113546339 NA other upstream 1491421 19313860 ~ 19316206 (+)
gng12a gbg12,gng12a,gng12,LOC107705318,LOC107700509,LOC105895117 other upstream 1587398 19204658 ~ 19220229 (+)
G323615 NA other downstream 137583 21021189 ~ 21157280 (+)

Expression


Co-expression Network