LOC117595742 (LOC108280410)


Basic Information

Item Value
gene id LOC117595742
gene name LOC108280410
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 21125873 ~ 21127829 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034297793.1
ATGAATGGATCTGTAAATCAGACGCAGTGCGTGAACATTGAGATCAGTCCGATTAGCGACTTGCTAATGGGCATCTACATCACTGCACTGGTGCTGGGCTTGGTGATTAACCTGCTCACGGCGTGGCCCATCATCCAGCAGATCCGCAAGAAGAACGTTCTGGGCGTCTACCTGCTCAGTCTGTCCATCTCAGACGTCCTCTACATCCTCACCATGCCACTGTGGATCATTTACTACTACAATGACCACCAGTGGAAGCTCGGCCTCAACCTGTGCAAGCTAGCTGGGTTTGTTTATTACTCCAACATGTACATCAGCATCTACCTGCTGTGCTGCATCTCCATCGACCGCTGCCTCGCCGTCACCTTTCCTCTGAAGACCAAGACTTTCCGCCGCTACAGGTACGCCTGGCTCATCTCGGGGTTCATCTACATCTTCACCGCCAGCCTGCACATCCTGGTCATTTTAATGGACAAGGTGACGGACCCTCTGGATAAATATGGCCGCTGCTACGAGACGTTTCCCATGACGGGGCGCGTGGCTCTGTTTAACCTCCTGCGCGTGGTCATCGGCTTCCTGCTGCCTCTGCTGGTGTTAGCCATGTGCTACTTTCAGATCTTCAGGAAGGTGAAGGAGAGCGTGGGATTAGACGATCAGGGCAAGCGCAAGGTCAAGCTGCTGTCTGTGGGAGTCATCGCCATCTTCTCCATCTGCTACGCCCCCTACCACATCCAGCTGCTCGTACGCTCCATCGCTTTTAACtactttcattttcagaaatacTGCGATTTCGAACAGGCGCAGCACTTTTACTTCTCCGGGACGCTGGCCATGTCGAGCCTGAACAGCGTGGTAGACCCTCTGCTCTACGTCTTAGTGAGTAACGGCATGAGGGAAAGCGTACGGCTCTGCTGTGGGACGAAATCATGCAGCTGCTCATAAACTGCCACAAAACACAGGCTGGAGCTGCAACACTGAGGATTAAACTCAGGAACTCCAAcagatttaaacaaaatgtgagGAAAAGTCACCTGATGGAAACATGGAAGGACATGAAAAAGGAACTCACTCCTGCCTGCAGCTAATTTCTCTCCAGTGTAGAGATCATTGAGGTGACCTTTAACCTTGAGGCTCTGCCCACAAGCATCTGATATCACATTAACGCTGTaacctgattggctgactgaTAAATGTTCACTAAGAAATGTTTGccttgtgttttaaaatgattagcGTTTTGTCTGAAACATTGGCGAATGAATGCACTTAATCGTCTGAAGTGTCAGTCACATGGTCTCTTCCTGTGAAAGGAAGCAGGACTTGTTTATTATAGccatgtttttcattaaaagtaCCAAAGATTTTGTAGAGAAAGTTGAGCTTGTGGACTGATGAGGCAGAAGCCAGAGGAGGAACCAAGAAGAGCTGGAGCAGTTTGTTTTCCTACAGTGGAAAAATGACAGAGGAGCAAAGAGcagcagagtgtgtgtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcagctttttaaactgaaatatacTCTAAGAAATCCCATCACGATTTATAAGGTGAAAAAAGGAATGAAGAACATCACACAGGGGAAGTTTGTGTTTCCTAATAAACTGCATCTCGCCATCATGTGAACGCAGCACAGAAACTCATCATGTTCACGTCTGTTAAAagatattaatgcatttgtatttttttttcagcttttgtaTTAATCTGAACGTTCTGTCTCTGATCCCTACATCTTTTGTTTCATCACTTTTAAAaccttaaacatttttaaaacctgatatttttttaaacagttaaattCTCTTTCACTCATTATTTCCAGCTCCATgtgtcttatttattaaaaactttgttttattttttgacaaATTTACACCTTCATTATAGAAGCACAAAcaggcaaaataataataaagataaaagataataaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034297793.1 True 1957 mRNA 0.45 1 21125873 21127829

Neighbor

gene id symbol gene type direction distance location
LOC113524959 LOC108280417 coding upstream 134269 20980749 ~ 20991604 (+)
trnap-ugg_22 NA coding upstream 210398 20915404 ~ 20915475 (+)
tecrl2b LOC108280320 coding upstream 232876 20886260 ~ 20892997 (+)
col11a1b col11a1b,LOC107594685,LOC107680048,LOC107700498,LOC107564536,LOC107710593,LOC104931259 coding upstream 242267 20807627 ~ 20883606 (+)
amer3 amer3 coding upstream 523342 20592866 ~ 20602531 (+)
G323669 NA non-coding upstream 6457 21105444 ~ 21119416 (+)
G323661 NA non-coding upstream 32495 21086944 ~ 21093378 (+)
G323643 NA non-coding upstream 35939 21026825 ~ 21089934 (+)
G323659 NA non-coding upstream 37432 21070419 ~ 21088441 (+)
G323650 NA non-coding upstream 62604 21053322 ~ 21063269 (+)
G323621 NA non-coding downstream 2404 21130233 ~ 21132361 (+)
G323676 NA non-coding downstream 5617 21133446 ~ 21134459 (+)
G323618 NA non-coding downstream 10084 21137913 ~ 21139687 (+)
trnap-ugg_23 NA non-coding downstream 14448 21142277 ~ 21142348 (+)
trnai-aau_18 NA non-coding downstream 19121 21146950 ~ 21147023 (+)
arhgef4 arhgef4,LOC107700563,LOC107710620,LOC107732940 other upstream 462054 20637584 ~ 20663819 (+)
G323534 NA other upstream 685312 20438702 ~ 20440561 (+)
clcn2a clcn2a,clcn2,LOC108280323,LOC107710554,LOC107732945 other upstream 844806 20129253 ~ 20281067 (+)
LOC113546339 NA other upstream 1809667 19313860 ~ 19316206 (+)
gng12a gbg12,gng12a,gng12,LOC107705318,LOC107700509,LOC105895117 other upstream 1905644 19204658 ~ 19220229 (+)

Expression


Co-expression Network