Item | Value |
---|---|
gene id | mib1 |
gene name | mib1,LOC107681781,LOC107550435,LOC107747519 |
gene type | coding |
species | striped catfish (Pangasianodon hypophthalmus) |
category of species | economic fish |
Item | Value |
---|---|
chromosome id | NC_047615.1 |
NCBI id | CM018561.1 |
chromosome length | 21248730 |
location | 17785947 ~ 17841185 (-) |
genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
symbol | description |
---|---|
mib1 | Enables identical protein binding activity and ubiquitin-protein transferase activity. Acts upstream of or within several processes, including animal organ development; nervous system development; and tube morphogenesis. Located in endocytic vesicle and perinuclear region of cytoplasm. Part of protein-containing complex. Is expressed in nervous system; neural tube; and pectoral fin. Used to study epilepsy. Human ortholog(s) of this gene implicated in left ventricular noncompaction. Orthologous to human MIB1 (MIB E3 ubiquitin protein ligase 1). |
description |
---|
PREDICTED: E3 ubiquitin-protein ligase mib1 isoform X4 |
id | name | namespace |
---|---|---|
GO:0021521 | ventral spinal cord interneuron specification | biological_process |
GO:0045747 | positive regulation of Notch signaling pathway | biological_process |
GO:0007507 | heart development | biological_process |
GO:0060113 | inner ear receptor cell differentiation | biological_process |
GO:0001756 | somitogenesis | biological_process |
GO:0048793 | pronephros development | biological_process |
GO:0071599 | otic vesicle development | biological_process |
GO:0061195 | taste bud formation | biological_process |
GO:0009880 | embryonic pattern specification | biological_process |
GO:0048546 | digestive tract morphogenesis | biological_process |
GO:0002090 | regulation of receptor internalization | biological_process |
GO:0021654 | rhombomere boundary formation | biological_process |
GO:0031076 | embryonic camera-type eye development | biological_process |
GO:0060218 | hematopoietic stem cell differentiation | biological_process |
GO:0001570 | vasculogenesis | biological_process |
GO:0008284 | positive regulation of cell population proliferation | biological_process |
GO:0051865 | protein autoubiquitination | biological_process |
GO:0007368 | determination of left/right symmetry | biological_process |
GO:0001885 | endothelial cell development | biological_process |
GO:0021986 | habenula development | biological_process |
GO:0045664 | regulation of neuron differentiation | biological_process |
GO:0030318 | melanocyte differentiation | biological_process |
GO:0045685 | regulation of glial cell differentiation | biological_process |
GO:0021508 | floor plate formation | biological_process |
GO:0021519 | spinal cord association neuron specification | biological_process |
GO:0021520 | spinal cord motor neuron cell fate specification | biological_process |
GO:0048471 | perinuclear region of cytoplasm | cellular_component |
GO:0030139 | endocytic vesicle | cellular_component |
GO:0000151 | ubiquitin ligase complex | cellular_component |
GO:0005886 | plasma membrane | cellular_component |
GO:0004842 | ubiquitin-protein transferase activity | molecular_function |
GO:0042803 | protein homodimerization activity | molecular_function |
GO:0008270 | zinc ion binding | molecular_function |
id | description |
---|---|
K10645 | MIB; E3 ubiquitin-protein ligase mind-bomb |
RNA id | representative | length | rna type | GC content | exon number | start site | end site |
---|---|---|---|---|---|---|---|
XM_034314507.1 | True | 3894 | mRNA | 0.57 | 23 | 17785947 | 17841185 |
XM_034314508.1 | False | 3891 | mRNA | 0.57 | 23 | 17785947 | 17841185 |
XM_034314509.1 | False | 3861 | mRNA | 0.57 | 23 | 17785947 | 17841185 |
XM_034314510.1 | False | 3858 | mRNA | 0.57 | 23 | 17785947 | 17841185 |
XM_034314511.1 | False | 3822 | mRNA | 0.57 | 22 | 17785947 | 17841185 |
XM_034314512.1 | False | 3789 | mRNA | 0.57 | 22 | 17785947 | 17841185 |
gene id | symbol | gene type | direction | distance | location |
---|---|---|---|---|---|
gata6 | gata6 | coding | downstream | 31982 | 17746619 ~ 17753965 (-) |
cables1 | cables1,LOC107681774 | coding | downstream | 85080 | 17673134 ~ 17700867 (-) |
mmp16b | LOC108280576,LOC108430178,LOC107552291,LOC107566471 | coding | downstream | 233010 | 17527966 ~ 17552937 (-) |
pter | pter,LOC107681810 | coding | downstream | 263718 | 17518043 ~ 17522229 (-) |
zcchc2 | zcchc2 | coding | downstream | 394048 | 17361640 ~ 17391899 (-) |
mkxb | mkx | coding | upstream | 36158 | 17877343 ~ 17890855 (-) |
LOC113546406 | LOC108280815 | coding | upstream | 69210 | 17910395 ~ 17964294 (-) |
tmtopsa | tmtopsa,LOC108280164,LOC108430153 | coding | upstream | 231949 | 18073134 ~ 18104805 (-) |
tnk2b | tnk2 | coding | upstream | 290771 | 18131956 ~ 18185148 (-) |
LOC113546402 | LOC108280489 | coding | upstream | 344723 | 18185908 ~ 18194006 (-) |
G322072 | fuz | non-coding | downstream | 304562 | 17480442 ~ 17481385 (-) |
G321998 | NA | non-coding | downstream | 396028 | 17359788 ~ 17389919 (-) |
G321652 | NA | non-coding | downstream | 1041932 | 16742906 ~ 16744015 (-) |
G321536 | NA | non-coding | downstream | 1176390 | 16608816 ~ 16609557 (-) |
LOC113533305 | NA | non-coding | downstream | 1238446 | 16546239 ~ 16547501 (-) |
G322251 | yme1l1b,yme1l1,LOC108430171,LOC107681681 | non-coding | upstream | 7967 | 17849152 ~ 17850372 (-) |
G322250 | NA | non-coding | upstream | 11448 | 17852633 ~ 17853837 (-) |
G322310 | bambib,LOC108280666,LOC108430169 | non-coding | upstream | 149579 | 17990764 ~ 17992868 (-) |
LOC113546439 | NA | non-coding | upstream | 502861 | 18344046 ~ 18346844 (-) |
G322550 | LOC108280742,LOC107705296,LOC107653517,LOC107564246 | non-coding | upstream | 585548 | 18426733 ~ 18427069 (-) |
G322080 | NA | other | downstream | 285115 | 17500065 ~ 17500832 (-) |
trnal-uaa_3 | NA | other | downstream | 812177 | 16973527 ~ 16973770 (-) |
stk11 | stk11 | other | downstream | 1198131 | 16564708 ~ 16587816 (-) |
G321462 | NA | other | downstream | 1418943 | 16357574 ~ 16367004 (-) |
LOC113533563 | NA | other | downstream | 2061591 | 15687082 ~ 15724356 (-) |
LOC113546399 | LOC108280496,LOC108430154 | other | upstream | 12662 | 17853847 ~ 17872108 (-) |
G322538 | NA | other | upstream | 553064 | 18394249 ~ 18394823 (-) |
G322826 | NA | other | upstream | 912587 | 18753772 ~ 18755593 (-) |
mrpl37 | mrpl37 | other | upstream | 1143988 | 18985173 ~ 18994636 (-) |
tceanc2 | tceanc2 | other | upstream | 1162054 | 19003239 ~ 19006379 (-) |