cwc25 (cwc25,LOC102792885,LOC101487873)


Basic Information

Item Value
gene id cwc25
gene name cwc25,LOC102792885,LOC101487873
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 18663158 ~ 18667572 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034314528.1
CCGGAAGTAGCTCCGTTCTCACTTCCAAAACAGACATGGCAGCCGTGTGAAGGAGACAAACATCAACGTTTGAGTAATTTCCCACATATTAAATCATATTTCCTTGAACTCTCTTCATCAACATGGGAGGCGGCGATCTTAACTTGAAGAAAAGCTGGCATCCACAGACGCTGAAGAACATCGAGCGTGTTTGGAAAGCCGAGCAGAAACACGAAGCTGAAAGGAAGAAGATCGAAGAGTTGCAGAAGGAGCTGAAAGAGGAGCGAGCTCGAGAGGAGATCACGAGATATGCGCAGGAAACCGGTGCAGTCAAGAAGAAGGATGAGCGTCTGGACTGGATGTATCAGGGCCCAGGGGGACAGATCTCCCGTGAGGAGTACCTCCTGGGTCGTCCCATTGATAAGCAGATCACACAGCAGTACGAAGAACCCGAGAGCGGGCCTTCTGCTGAAACCGGCCTCCTGCCCGGCTCCATCTTCAACTCCACCACCTCTATGTCCAGCATGGACATGGCCTCTAAAATAAGAGAAGATCCACTGTTTGATATCCGTAAGcgtgaggaggaaaaaaagagaagcattCTCACCAATCCTGTTAAAATGAAAGAGATACGCAAAATGttACGTGAGAATTTAGataaggagaaaaagaagaagaggaagaaggacAAGAAGGAAAAGCGAGATGAAAAGGAAAGGAGGAAGGATAAGAAACACAAACGGAGGAGTTCCAGCTCTGATGAGGAAGACAGGAAGCACAGGTCAAGGGAAGAAAATGGAGTCACAAACTCTCATTCACATCACAAATCTGGCTACGGACTGCAGTTACCAGCAGGCAGGTCATCTCAGTCATCAGAGTCGACCCACAGGAGGGACCGGAGTCGCTCTCCGCTGGGTTccagagaggaaaagaggaatcGTTCACCTCACAATCCCGACAGGCAACACAAATCTAAAGCTCCGAGCCCTTCGAGACCAAGAGAGCGCTATCACAGACCACAGAGCACCAACCACAGCAAGCATCTCTCGGCTGAAGAGctggagaagaggaggaaagaaaTGATGGGCTTCGCCcgtgagagagaggaggagagagagagcaacgtGCAGAGGTACAAACGACAAGAGgagcaggagaaagaaagagacagcaaGACCAAACAAAGCGGCCAGGCCACGTTCATACATAACATGAAGCTGGAGAGTGCTGCCACCTCGTCCGTGGAGGATCGGGTGAAGAGGAACATCCACTCCATTCAGAGGACCTCTGCCTCTCTGGAGAAGAACTTCATGAGAAGATAAAAAGTGGCAGAAGAAGGCATGCTGTCATTacggtttcttttttt

Function

symbol description
cwc25 Predicted to be involved in mRNA splicing, via spliceosome. Predicted to act upstream of or within mRNA processing. Predicted to be located in nucleus. Predicted to be part of U2-type spliceosomal complex. Orthologous to human CWC25 (CWC25 spliceosome associated protein homolog).

NR:

description
PREDICTED: pre-mRNA-splicing factor CWC25 homolog

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034314528.1 True 1345 mRNA 0.49 9 18663158 18667572

Neighbor

gene id symbol gene type direction distance location
fgf12a fgf12a,fgf12,LOC108280711,LOC108436038,LOC106568709,LOC105006885,LOC106598267,LOC103365152,LOC107549734 coding upstream 25454 18585063 ~ 18637704 (+)
mb21d2 mb21d2,LOC107705301,LOC107572431,LOC107673980 coding upstream 80938 18574380 ~ 18582220 (+)
crfb16 NA coding upstream 90655 18562098 ~ 18572503 (+)
LOC113546359 LOC108280706 coding upstream 116995 18543905 ~ 18546163 (+)
dusp28 dusp28 coding upstream 142168 18517928 ~ 18520990 (+)
LOC113546386 LOC108280704 coding downstream 24620 18692192 ~ 18716552 (+)
mffb LOC108280720 coding downstream 79955 18747527 ~ 18754060 (+)
bpnt2 impad1 coding downstream 89157 18756729 ~ 18763488 (+)
penka LOC108280728 coding downstream 123773 18791345 ~ 18797861 (+)
sdr16c5a LOC108280727 coding downstream 131631 18799203 ~ 18810210 (+)
G322462 NA non-coding upstream 223292 18439167 ~ 18439866 (+)
G322446 NA non-coding upstream 230456 18432326 ~ 18432702 (+)
G322429 NA non-coding upstream 289275 18370727 ~ 18373883 (+)
G322405 NA non-coding upstream 319668 18338329 ~ 18343490 (+)
G322398 NA non-coding upstream 431695 18229395 ~ 18231463 (+)
G322696 NA non-coding downstream 47823 18715395 ~ 18720439 (+)
G322738 NA non-coding downstream 97620 18765192 ~ 18765602 (+)
G322744 NA non-coding downstream 143533 18811105 ~ 18812335 (+)
G322746 NA non-coding downstream 144931 18812503 ~ 18812848 (+)
G322747 NA non-coding downstream 147042 18814614 ~ 18814817 (+)
pex5lb pex5lb,LOC108280742,LOC108440867,LOC107653517,LOC107564246,LOC107660316 other upstream 233136 18394023 ~ 18430022 (+)
si:ch211-162e15.3 LOC108280563 other upstream 435925 18225921 ~ 18227233 (+)
npc1 npc1 other upstream 996945 17589072 ~ 17666213 (+)
egfra egfr,LOC107747514,LOC107691124 other upstream 1026549 17570649 ~ 17636609 (+)
fuz fuz other upstream 1179481 17478834 ~ 17483677 (+)
slc44a5a slc44a5,slc44a5a,LOC108280730 other downstream 148437 18816009 ~ 18871360 (+)
ssbp3a ssbp3,ssbp3a other downstream 277126 18944698 ~ 18985082 (+)
gng12a gbg12,gng12a,gng12,LOC107705318,LOC107700509,LOC105895117 other downstream 537086 19204658 ~ 19220229 (+)
LOC113546339 NA other downstream 646288 19313860 ~ 19316206 (+)
clcn2a clcn2a,clcn2,LOC108280323,LOC107710554,LOC107732945 other downstream 1461681 20129253 ~ 20281067 (+)

Expression


Co-expression Network