LOC113524959 (LOC108280417)


Basic Information

Item Value
gene id LOC113524959
gene name LOC108280417
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 20980749 ~ 20991604 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034314548.1
CTCCATCTTCCTCATTACAGATGAAACATGGCGGCTGTGAGTAAGTACCTGACAGCCAGGAGCTCCTCCATCACAGGTGCTTTAGCCTTAGTCGCTTTGTGTCTGCTCAAACACAGGAGACGAGCTTCCAAAGCCAGTAATGGGTTTAACAGGAATTCAAAGCTCCATTCAGAATCATGTCAGGATGGCAGGAAGGACAAAGCCATCGTGGATCAGCTCTTCATCTCTCGCATCTACAAGATCCTGAAGATTCTGATGCCGCAGCTGTTGTGTAAAGAGtcggGGTATCTGGTGCTCATCGCTGCCATGCTTCTGGCTCGAACCTGCTGCGATGTCTGGATGATCCACAATGGCACCATGATCGAGAGtgcaatCATTGGACGATCAACAAAAGCATTCAGGGCCTGTTTGTTCAACTTCATCGCTGCCATGCCACTTATCTCATTAGTGAATAATTTTCTGAAACTGGGGCTGCACAAGCTGAAGCTGTGTTTCCGCGTGAGACTCACTGatcacctgtacacacactaccTCAGAGGTTTCACCTACTACAGGATGGGGAACGTGGATAATCGGGTCGTGAATCCAGACCAGCTGCTGACGCAGGACGTGGAGCGGTTCTGTAACAGCGTGGTGGATCTGTACTCCAACATCAGCAAGCCTCTACTCGACATCgttatttacctcctcaaactGACGACCGCCGTCGGAGCCGAGggacCGGTTACCTTGCTGAGTTATCTGGTCTTCTCTGGTCTGTTGTTGACGTGGTTACGGCGTCCGGTCGGGAAAATGACTGCAGCTGAACAGAAACACGAGGGAGAATTCAGATACGCAAACTCCTGGCTCATTActaacagtgaggaaATCGCCTTCTACAACGGCGGCCAAAGAGAAAAGATCAACATCCATCAAACTTTCCACAAACTGGTGGAGCATCTGAAGCGGTTTATCTGGTTCCGCTTCTCCATGGGGGTAGTTGACAGCATCGTGGCTAAGTACATCGCCTTCGTGGTCGGATACCTCGCGGTCAGTCGGCCATTTTTAGACCCGACAAACACTCGCCTTGATCACAGCACACACGCCCAGAGACTGGAGgagtatTATCAGAGTGGCAGGATGTTAATCAGTATGGCTCAGGCTTTGGGGAGAATCGTTCTGGCAGGCAGAGAGATGAGCCGACTGTCAggCTTCACATCGAGGATCAGTGAGATTCAGGACGTGTTGAATGATTTAAACAGCAGCAGGTATGAGCGCAGCGCCGTCGCCTCAGCAGGAGGAAAAGCTTCAGAGCGTCCACAGGAAGTGGAGAACTCGGCTCGGCCTCCCGGCACAGGAGAGATTATTATAGCTGATAACATCATCAGGTTTGAACACGTGCCTCTGTTAACACCAAACGGCGACGTCCTGATCCGGGATTTATCCTTCGAggtgttgtCGGGGGCGAATGTGTTGGTGTGTGGACCAAATGGCTGTGGGAAGAGTTCACTGTTCAGAGTTCTGGGAGAGttgTGGCCTCTGTTTGGAGGACGTATCACCAAACCACATCGAGGGAAACTCTTCTACATCCCGCAGaggccGTACATGACTCTAGGTACACTCAGGGATCAGGTTATTTATCCCGACACACACATGGAGCAAATACGGAAGGAAATCTCGGATCAGGTGTTGAAGGATTACCTGGATAGAGTGCAGCTGTCTCACATCGTGGAGCGAGAGAGCGGTTGGGAGAGCGAGCAGGACTGGATGGATGTTCTGAGTggaggagagaaacagaggatgGCGATGGCTCGTTTGTTCTACCACAAGCCTCAGTTCGCCATTTTAGACGAGTGTACGAGTGCCGTGAGTGTGGACGTGGAGGATTACATCTACAGCCACTGCAGGAaggttGGAATCACTCTGTTCACTGTCTCACACAGGAAGTCACTGTGGAAACACCACgagttttACCTACACATGGACGGCAGAGGAGGTTACGAGTTCAAGCGCATCACCGAGGACACGGTGCAGTTCGgctcatgagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgatcttttGTCTCCGTGACAGAGGAAGGTGTTTATCGTCTCTCAGATTGAGATCACACTTTAAACATTTCTCACGTGAAGTTTCAGTTTTTAACGTTTTAACTGAAGTCCTGATTTTCTGCTGTGATGAAAACACTCAGGATTATTTCTGTATCTGTGGGATTTACTGTTACgcattttagtgtgtgtgtgtgtgtgtgtgtgtgttttttttaatgaagtcatttttgttgttaaacTGCAATAACGTCTGTTACAAATTCAAACTTCCTCgcatgtataaaatatatttatttaatatgtttattcatCACCTGGATCT
>XM_034314549.1
CTCCATCTTCCTCATTACAGATGAAACATGGCGGCTGTGAGTAAGTACCTGACAGCCAGGAGCTCCTCCATCACAGGTGCTTTAGCCTTAGTCGCTTTGTGTCTGCTCAAACACAGGAGACGAGCTTCCAAAGCCAGTAATGGGTTTAACAGGAATTCAAAGCTCCATTCAGAATCATGTCAGGATGGCAGGAAGGACAAAGCCATCGTGGATCAGCTCTTCATCTCTCGCATCTACAAGATCCTGAAGATTCTGATGCCGCAGCTGTTGTGTAAAGAGtcggGGTATCTGGTGCTCATCGCTGCCATGCTTCTGGCTCGAACCTGCTGCGATGTCTGGATGATCCACAATGGCACCATGATCGAGAGtgcaatCATTGGACGATCAACAAAAGCATTCAGGGCCTGTTTGTTCAACTTCATCGCTGCCATGCCACTTATCTCATTAGTGAATAATTTTCTGAAACTGGGGCTGCACAAGCTGAAGCTGTGTTTCCGCGTGAGACTCACTGatcacctgtacacacactaccTCAGAGGTTTCACCTACTACAGGATGGGGAACGTGGATAATCGGGTCGTGAATCCAGACCAGCTGCTGACGCAGGACGTGGAGCGGTTCTGTAACAGCGTGGTGGATCTGTACTCCAACATCAGCAAGCCTCTACTCGACATCgttatttacctcctcaaactGACGACCGCCGTCGGAGCCGAGggacCGGTTACCTTGCTGAGTTATCTGGTCTTCTCTGGTCTGTTGTTGACGTGGTTACGGCGTCCGGTCGGGAAAATGACTGCAGCTGAACAGAAACACGAGGGAGAATTCAGATACGCAAACTCCTGGCTCATTActaacagtgaggaaATCGCCTTCTACAACGGCGGCCAAAGAGAAAAGATCAACATCCATCAAACTTTCCACAAACTGGTGGAGCATCTGAAGCGGTTTATCTGGTTCCGCTTCTCCATGGGGGTAGTTGACAGCATCGTGGCTAAGTACATCGCCTTCGTGGTCGGATACCTCGCGGTCAGTCGGCCATTTTTAGACCCGACAAACACTCGCCTTGATCACAGCACACACGCCCAGAGACTGGAGgagtatTATCAGAGTGGCAGGATGTTAATCAGTATGGCTCAGGCTTTGGGGAGAATCGTTCTGGCAGGCAGAGAGATGAGCCGACTGTCAggCTTCACATCGAGGATCAGTGAGATTCAGGACGTGTTGAATGATTTAAACAGCAGCAGGTATGAGCGCAGCGCCGTCGCCTCAGCAGGAGGAAAAGCTTCAGAGCGTCCACAGGAAGTGGAGAACTCGGCTCGGCCTCCCGGCACAGGAGAGATTATTATAGCTGATAACATCATCAGGTTTGAACACGTGCCTCTGTTAACACCAAACGGCGACGTCCTGATCCGGGATTTATCCTTCGAggtgttgtCGGGGGCGAATGTGTTGGTGTGTGGACCAAATGGCTGTGGGAAGAGTTCACTGTTCAGAGTTCTGGGAGAGttgTGGCCTCTGTTTGGAGGACGTATCACCAAACCACATCGAGGGAAACTCTTCTACATCCCGCAGaggccGTACATGACTCTAGGTACACTCAGGGATCAGGTTATTTATCCCGACACACACATGGAGCAAATACGGAAGGAAATCTCGGATCAGGTGTTGAAGGATTACCTGGATAGAGTGCAGCTGTCTCACATCGTGGAGCGAGAGAGCGGTTGGGAGAGCGAGCAGGACTGGATGGATGTTCTGAGTggaggagagaaacagaggatgGCGATGGCTCGTTTGTTCTACCACAAGCCTCAGTTCGCCATTTTAGACGAGTGTACGAGTGCCGTGAGTGTGGACGTGGAGGATTACATCTACAGCCACTGCAGGAaggttGGAATCACTCTGTTCACTGTCTCACACAGGAAGTCACTGTGGAAACACCACgagttttACCTACACATGGACGGCAGAGGAGGTTACGAGTTCAAGCGCATCACCGAGGACACGGTGCAGTTCGgctcatgagtgtgtgtgtgtgtgtgtgagtgtgtgtgtgtgtgtgtgtgtgtgttttttttaatgaagtcatttttgttgttaaacTGCAATAACGTCTGTTACAAATTCAAACTTCCTCgcatgtataaaatatatttatttaatatgtttattcatCACCTGGAT
>XM_034314550.1
CTCCATCTTCCTCATTACAGATGAAACATGGCGGCTGTGAGTAAGTACCTGACAGCCAGGAGCTCCTCCATCACAGGTGCTTTAGCCTTAGTCGCTTTGTGTCTGCTCAAACACAGGAGACGAGCTTCCAAAGCCAGTAATGGGTTTAACAGGAATTCAAAGCTCCATTCAGAATCATGTGATGGCAGGAAGGACAAAGCCATCGTGGATCAGCTCTTCATCTCTCGCATCTACAAGATCCTGAAGATTCTGATGCCGCAGCTGTTGTGTAAAGAGtcggGGTATCTGGTGCTCATCGCTGCCATGCTTCTGGCTCGAACCTGCTGCGATGTCTGGATGATCCACAATGGCACCATGATCGAGAGtgcaatCATTGGACGATCAACAAAAGCATTCAGGGCCTGTTTGTTCAACTTCATCGCTGCCATGCCACTTATCTCATTAGTGAATAATTTTCTGAAACTGGGGCTGCACAAGCTGAAGCTGTGTTTCCGCGTGAGACTCACTGatcacctgtacacacactaccTCAGAGGTTTCACCTACTACAGGATGGGGAACGTGGATAATCGGGTCGTGAATCCAGACCAGCTGCTGACGCAGGACGTGGAGCGGTTCTGTAACAGCGTGGTGGATCTGTACTCCAACATCAGCAAGCCTCTACTCGACATCgttatttacctcctcaaactGACGACCGCCGTCGGAGCCGAGggacCGGTTACCTTGCTGAGTTATCTGGTCTTCTCTGGTCTGTTGTTGACGTGGTTACGGCGTCCGGTCGGGAAAATGACTGCAGCTGAACAGAAACACGAGGGAGAATTCAGATACGCAAACTCCTGGCTCATTActaacagtgaggaaATCGCCTTCTACAACGGCGGCCAAAGAGAAAAGATCAACATCCATCAAACTTTCCACAAACTGGTGGAGCATCTGAAGCGGTTTATCTGGTTCCGCTTCTCCATGGGGGTAGTTGACAGCATCGTGGCTAAGTACATCGCCTTCGTGGTCGGATACCTCGCGGTCAGTCGGCCATTTTTAGACCCGACAAACACTCGCCTTGATCACAGCACACACGCCCAGAGACTGGAGgagtatTATCAGAGTGGCAGGATGTTAATCAGTATGGCTCAGGCTTTGGGGAGAATCGTTCTGGCAGGCAGAGAGATGAGCCGACTGTCAggCTTCACATCGAGGATCAGTGAGATTCAGGACGTGTTGAATGATTTAAACAGCAGCAGGTATGAGCGCAGCGCCGTCGCCTCAGCAGGAGGAAAAGCTTCAGAGCGTCCACAGGAAGTGGAGAACTCGGCTCGGCCTCCCGGCACAGGAGAGATTATTATAGCTGATAACATCATCAGGTTTGAACACGTGCCTCTGTTAACACCAAACGGCGACGTCCTGATCCGGGATTTATCCTTCGAggtgttgtCGGGGGCGAATGTGTTGGTGTGTGGACCAAATGGCTGTGGGAAGAGTTCACTGTTCAGAGTTCTGGGAGAGttgTGGCCTCTGTTTGGAGGACGTATCACCAAACCACATCGAGGGAAACTCTTCTACATCCCGCAGaggccGTACATGACTCTAGGTACACTCAGGGATCAGGTTATTTATCCCGACACACACATGGAGCAAATACGGAAGGAAATCTCGGATCAGGTGTTGAAGGATTACCTGGATAGAGTGCAGCTGTCTCACATCGTGGAGCGAGAGAGCGGTTGGGAGAGCGAGCAGGACTGGATGGATGTTCTGAGTggaggagagaaacagaggatgGCGATGGCTCGTTTGTTCTACCACAAGCCTCAGTTCGCCATTTTAGACGAGTGTACGAGTGCCGTGAGTGTGGACGTGGAGGATTACATCTACAGCCACTGCAGGAaggttGGAATCACTCTGTTCACTGTCTCACACAGGAAGTCACTGTGGAAACACCACgagttttACCTACACATGGACGGCAGAGGAGGTTACGAGTTCAAGCGCATCACCGAGGACACGGTGCAGTTCGgctcatgagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgatcttttGTCTCCGTGACAGAGGAAGGTGTTTATCGTCTCTCAGATTGAGATCACACTTTAAACATTTCTCACGTGAAGTTTCAGTTTTTAACGTTTTAACTGAAGTCCTGATTTTCTGCTGTGATGAAAACACTCAGGATTATTTCTGTATCTGTGGGATTTACTGTTACgcattttagtgtgtgtgtgtgtgtgtgtgtgtgttttttttaatgaagtcatttttgttgttaaacTGCAATAACGTCTGTTACAAATTCAAACTTCCTCgcatgtataaaatatatttatttaatatgtttattcatCACCTGGATCT

Function

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0006200 obsolete ATP catabolic process biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0042626 ATPase-coupled transmembrane transporter activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034314548.1 True 2376 mRNA 0.49 23 20980749 20991604
XM_034314549.1 False 2184 mRNA 0.50 24 20980749 20991602
XM_034314550.1 False 2373 mRNA 0.49 23 20980749 20991604

Neighbor

gene id symbol gene type direction distance location
trnap-ugg_22 NA coding upstream 65274 20915404 ~ 20915475 (+)
tecrl2b LOC108280320 coding upstream 87752 20886260 ~ 20892997 (+)
col11a1b col11a1b,LOC107594685,LOC107680048,LOC107700498,LOC107564536,LOC107710593,LOC104931259 coding upstream 97143 20807627 ~ 20883606 (+)
amer3 amer3 coding upstream 378218 20592866 ~ 20602531 (+)
atr atr,LOC107677746,LOC107700496 coding upstream 391291 20572562 ~ 20589458 (+)
LOC117595742 LOC108280410 coding downstream 134269 21125873 ~ 21127829 (+)
G323603 NA non-coding upstream 34670 20933232 ~ 20946079 (+)
G323578 NA non-coding upstream 275555 20672934 ~ 20705194 (+)
G323577 NA non-coding upstream 308295 20671728 ~ 20672454 (+)
G323576 NA non-coding upstream 310589 20669685 ~ 20670160 (+)
G323574 NA non-coding upstream 327388 20652233 ~ 20653361 (+)
LOC117599988 NA non-coding downstream 32568 21024172 ~ 21024556 (+)
G323625 NA non-coding downstream 34817 21026421 ~ 21037720 (+)
G323643 NA non-coding downstream 35221 21026825 ~ 21089934 (+)
G323644 actn4,LOC108261236,LOC108440922,LOC107737420 non-coding downstream 41274 21032878 ~ 21042418 (+)
G323646 NA non-coding downstream 43421 21035025 ~ 21043991 (+)
arhgef4 arhgef4,LOC107700563,LOC107710620,LOC107732940 other upstream 316930 20637584 ~ 20663819 (+)
G323534 NA other upstream 540188 20438702 ~ 20440561 (+)
clcn2a clcn2a,clcn2,LOC108280323,LOC107710554,LOC107732945 other upstream 699682 20129253 ~ 20281067 (+)
LOC113546339 NA other upstream 1664543 19313860 ~ 19316206 (+)
gng12a gbg12,gng12a,gng12,LOC107705318,LOC107700509,LOC105895117 other upstream 1760520 19204658 ~ 19220229 (+)
G323615 NA other downstream 29585 21021189 ~ 21157280 (+)

Expression


Co-expression Network