LOC113533470


Basic Information

Item Value
gene id LOC113533470
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 12782537 ~ 12796824 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034314598.1
ATAcctgatttttatatttctagAACAACAtgaaaaagcataaataaatataacaaataacctcaggaaCAATTGGTCGTGCCCTTCTACAGCTTTTTGTCAGTTTTTTATAGTTAGGTGCAAACACAAGCATGACTTCCTTAATCTAAAGAGGAAGCTCTCATACATGATGGCGGTGGTGATGCAGCTGgtcttctttctcttcatcttgGTCTCAATTACAGTGTCTCAAAATGTGTTTAAGCTGATTAACAGTTCTGTTCAACTGGATGTACAAACAAAAGGTTATCAGTTCCTAGACTTCACATGGACATTTAACAAAAGTAATAACATTGTGAAACACTATAAAAATTCTCCAAGTATAGTATTCCCTGATTATGAAGAGAGAGTGGAGTTGAATGAGAAAACCCATAGTCTGACCCTGAAGAACTTGCAGAAGAATGATAATGGACTCTATGCAGCAACAGCTGCATTTACACAAAACCTGAAAGTGGCCGAGTACCAATTATATGTGTTAGATCCAGTGGAGAAACCAGTCCTTAATGTCTCTCCCCAGCAAAGCAATGATGCCTGTATTGTGACTCTTACCTGTGAAGCTCAGAAACTCTCAATCACCTCTCACTGCTACAGTGATAATTGTGATATGAAGGAAGAGAAAATGGCTAGAGATGCGTTCCTTTCCCTCTCATTGTATGTCAGTAACAGCTTCATTATTTGTAATCATAGCAACCCAGTCAGCTGGAAATATACAGCTGTGGAGATGCAACATGTGAAACAACTCTGCCTTCCTGAAGGCGTAAGCATGCACACATTCTGCATGGggtaaatttaaatataagtaaaatgtaaattctttattaatgtattatcaATAATTGATACTCATGGTATTATTCAATGATTAGGATTAAATATCTCTGTCACTTATGTGTTAAGATGATTGGATAAATGTCATCTTtgtctctgtatctgtttagtactCCAAATATATGTACCTATATCTGGATTAACCCCGATGTGGGCATGGTGTGACTTGTTTAGCACACCGAGATGTAAATagcaggaaattaaagctgaaattctgttctatca
>XM_034314599.1
TAACTTCCTTAATCTAAAGAGGAAGGTCTCATACATGATGGCGGTGGTGATGCAGCTGgtctcctttctctccatcttggTCTCCATTACAGtgtgtgttgatgtttttaAGCTGGTTGGCAGTTCTGTTCAACTGGACTTACAAAAAAACTTTGATAAGTCCTTCGATCTCATCTGGTTATTTAACAGAAGTAATAatattgtgaaatataatgGAAAGCCTCCAACTAGAGTGTTCAGAAGTTATAAAGACAGAGTGGAGTTCAATGAGGAAACCCACAGTCTGACACTGAAGAACTTACAGAAGAGTGACAGTGGACTCTATGAAGCAGAAGCAATTGATGAAATGATGGAAATTGTTGCAACGTACCAATTATATGTGTTAGATCCAGTGGAGAAACCAGTCCTTAATGTCTCTCCCCAGCAAAGCAATGATGCCTGTATTGTGACTCTTACCTGTGAAGCTCAGAAACTCTCAATCACCTCTCACTGCTACAGTGATAATTGTGATATGAAGGAAGAGAAAATGGCTAGAGATGCGTTCCTTTCCCTCTCATTGTATGTCAGTAACAGCTTCATTATTTGTAATCATAGCAACCCAGTCAGCTGGAAATATACAGCTGTGGAGATGCAACATGTGAAACAACTCTGCCTTCCTGAAGGCGTAAGCATGCACACATTCTGCATGGggtaaatttaaatataagtaaaatgtaaattctttattaatgtattatcaATAATTGATACTCATGGTATTATTCAATGATTAGGATTAAATATCTCTGTCACTTATGTGTTAAGATGATTGGATAAATGTCATCTTtgtctctgtatctgtttagtactCCAAATATATGTACCTATATCTGGATTAACCCCGATGTGGGCATGGTGTGACTTGTTTAGCACACCGAGATGTAAATagcaggaaattaaagctgaaattctgttctatca

Function

GO:

id name namespace
GO:0050900 leukocyte migration biological_process
GO:0002376 immune system process biological_process
GO:0030595 leukocyte chemotaxis biological_process
GO:0060326 cell chemotaxis biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034314598.1 True 1092 mRNA 0.37 4 12792135 12796824
XM_034314599.1 False 960 mRNA 0.38 3 12782537 12796824

Neighbor

gene id symbol gene type direction distance location
LOC113533522 NA coding upstream 354006 12416510 ~ 12428531 (+)
pax3a pax3a,LOC108280216,LOC108439877 coding upstream 1159692 11596699 ~ 11622845 (+)
trnag-ccc_6 NA coding upstream 1209640 11572827 ~ 11572897 (+)
trnai-aau_17 NA coding upstream 1233349 11549115 ~ 11549188 (+)
trnap-agg_14 NA coding upstream 1234358 11548108 ~ 11548179 (+)
LOC113533117 LOC108280188,LOC108433071 coding downstream 171490 12968314 ~ 12982849 (+)
abhd17aa abhd17aa,LOC108280794,LOC108433103,LOC105904035,LOC107757810,LOC107698472,LOC107599293,LOC107600230,LOC106584389 coding downstream 207970 13004794 ~ 13014554 (+)
rorcb rorcb,LOC108280913,LOC108433101,LOC107757806,LOC107698501 coding downstream 389107 13185931 ~ 13216057 (+)
sh3gl1a sh3g1,LOC108433099 coding downstream 420666 13217490 ~ 13241937 (+)
stap2a stap2a,LOC108280350,LOC108433098,LOC107713653,LOC107698505,LOC107757807 coding downstream 456786 13253610 ~ 13265447 (+)
LOC117599962 NA non-coding upstream 18810 12761836 ~ 12763727 (+)
G319087 NA non-coding upstream 154647 12627675 ~ 12627890 (+)
LOC117599992 NA non-coding upstream 156783 12622299 ~ 12625754 (+)
LOC117599989 NA non-coding upstream 210130 12559513 ~ 12572407 (+)
G318725 NA non-coding upstream 710350 12063884 ~ 12072187 (+)
G319198 NA non-coding downstream 8698 12805522 ~ 12805732 (+)
G319276 NA non-coding downstream 225503 13022327 ~ 13023135 (+)
G319286 NA non-coding downstream 240198 13037022 ~ 13037736 (+)
G319314 NA non-coding downstream 290439 13087263 ~ 13087475 (+)
G319318 NA non-coding downstream 305523 13102347 ~ 13102608 (+)
G318439 NA other upstream 1313038 11467299 ~ 11469499 (+)
per2 LOC108280459,LOC108439864 other upstream 1317768 11399884 ~ 11464769 (+)
camk2n1a camk2n2,camk2n1a,LOC107659987,LOC107600060,LOC107557885 other upstream 2048449 10730346 ~ 10734088 (+)
eif4e2 eif4e2,LOC107600102,LOC107579667,LOC107749152,LOC107730458 other upstream 2213630 10563821 ~ 10568907 (+)
capn10 capn10 other upstream 2219543 10536431 ~ 10562994 (+)
sema6ba si:ch211-168n16.1,LOC108280795,LOC108433102,LOC107713651,LOC107600229,LOC107757803,LOC107662975,LOC107698499,LOC105903857 other downstream 224318 13021142 ~ 13154527 (+)
LOC113533270 mtcl1 other downstream 1040609 13837433 ~ 13897914 (+)
zmp:0000000521 zmp:0000000521,LOC108280721,LOC107696078,LOC108442439,LOC107596226,LOC105888700 other downstream 1283425 14080249 ~ 14127012 (+)
rab31 rab31 other downstream 1589414 14386238 ~ 14466753 (+)
tle2c zgc:136336,LOC108280589,LOC108427215 other downstream 1840957 14637781 ~ 14666508 (+)

Expression


Co-expression Network