LOC113524963 (LOC108280315,LOC108413460,LOC102229933,LOC103146349,LOC107085927,LOC103396494,LOC103353958,LOC103479750)


Basic Information

Item Value
gene id LOC113524963
gene name LOC108280315,LOC108413460,LOC102229933,LOC103146349,LOC107085927,LOC103396494,LOC103353958,LOC103479750
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 20732601 ~ 20757942 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034314622.1
CACCATCATCTCCTCAACCTCCACCCTGGATAAACACGCTcaaaccctcacacacactccgcggagacagacaggagtgtgtgtgtgtgtgtgtgtgtgtgtgagagagagagagacactgaaaacattcatttattttaaaaaacatatttgagtAGTTATTAATGTGGATGGAGAAGCGACGTGGGCTTAGTGGAGAGATTCTCCTGTTTTTATGGCTGAAGTTGTGATGAAGTGAAGATGTGGATTAAAATCGGAGAACTCCGGGATCCatgcagATGAACGATCTCACAGGAAACGGCGACTAGCGAGAAGTCTGACTGACAAGGCTACAACTTCTTTgaagaaaattttttaaaaagccgcacagtttaaaaaaaaaactttcaaagCCTCACAGTGGCATTGAGCAGCACATCGGACCATCTGAGGAGTAAAAActatttctgttttcatcttttcagACGTGTGGCGCTTTTTACAATCCATTTCTAATATTTATCGGCAGATTTGCTGCaaagtttggagaaaaaagtgaattttttcCCTTGATGACGCACGTCACATGCTTATGTGACAGAAAACAACTTGAGTAAAAAGTGAATTATGTAAAGACTTTTGTCTGATGATTAGCGCATGCTAGCATTTCACATTTAGCGCTGTTCTCAGATTATATAATGACTGACACGTGCATGTTTTACTCTTTTTCTGACGGCTAGCTCTCTATTTTGTAGCCGTATTTTGCAATACATTTCAATCTGCTAAAGACTGTAAAgtaaatttttacaaaattctGAATCGGCTAAATCAGCGCTAGCGCTAGCATGCTGCCTTTACAAACCTAAACATCCTAAAATCAAGCCTCAGATTCCGTGTTTTATTTCCGTCGTTGTTATCCGTTGCAAATGATTTAGCAGCCATGCAGCTAGCGTTAGCGTTAGCACTGCAGGCGTGTTGGGTGTGTATTAGCCGTGCGATACAGCACTCTCCGGCCTCATGGGGGCACTACGACGTCTGCAGATCACAACTTTACACAGACGATGGACTCGTGTGGCATTACATGGCGTGCCAGCCGGAATCCACCGACATGACCAAGTACGTCAAAGTGAATCTGGAGCCGGAGAACATCACGTGCGGAGAACCGCCCGAGATCTACTGCGCTCTGGAGAACCCGTACATGTGCAATAACGAATGTGACGCCGCTACAGAGGAACTCGCTCACCCTCCCGAGCTCATGTTCGACGTTGAGGGTCGAAACCCGACCACATTCTGGCAGTCGACCACGTGGAAGACGTACCCCAAACCTCTGCAGGTGAACATCACGCTGTCGTGGAACAAAACCATCGAGCTGACCGACGACATCGTGATCACGTTCGAATCGGGTCGACCCGAGCagatggtcctggagaaatctCTGGACTACGGGAGAACGTGGCAGTCGTACCAGTTCTACGCCACCGACTGCCTGGACGCCTTCGCCATGGAGCCCAGGTCCGTGCGTGAGATTTCCCAGCGCACGCTGCTGGACATCTTCTGCACCGAAGATTATTCCCGAGGTTACGTCTGGAAATACGACAAAACGGTGCGATTCGAGATCAAAGATCGTTTCGCGCTGTTCGCCGGCCCACGACTGCACAACATGGCGTCTTTATACGGACAGTTAGACACCACCAGAAACCTGAGGGACTTTTTTACACTGACAGATTTACGGGTCCGACTTTTACGGCCTGCGACGGGAGCCACGACGGTGGACGAGGACAATCTGTCCAGATATTTCTACGCCATTTCAGACATCAAAGTCCAAGGCAGGTGTAAGTGTAACCTCCATGCCAACTCGTGTGTGTTTGATAAAGGGAAGCTGAGCTGCGAGTGTGAACACAACACGACGGGACCCGACTGTTCACGCTGTAAAAAACACTATCAGGGCCGAGCGTGGAGCCCGGGGTCGTACCTGCCCATTCCCAAGGGCACGGCTAACGTGTGTGTTCAGAGCGGTCCAGCAGGTCGGCCGAACGTCTCGTCTCTTGGAGTCGCAAATCGAAATCAAGCTCGAGTGTGTGACGACGTGCTGCTGCGCTGTCAGAACGGcggagtgtgtgttcagcaccAGCGCTGTCGCTGTCCTCCGGGATTTTCCGGAGTGTTGTGTGAAACGGAGCGATGCCGCGGTGGCCAGGCCTGTGAGGAGCTCCGATCAGGACGTGACTGTCTCCGTCTCTCGTCTCTGCCACTCTTTTATTCCCTCGTTCTCTCGCTCTCGTCTCTCCGCCGCGTCTGAGGGAAGGAGGAACGCCGAGGAACGCGACTGAGGAACACGACTGAGGAACGCGACTGAGGAACACGAACACAACGCACAGAGACGGCGTTACACTCAGCCACAGTGTAAACATGATGAAGGACAACgtacacacagcatacacacaacacacacaacacacacaacgtacacacaacatacacac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034314622.1 True 2462 mRNA 0.50 7 20732601 20757942

Neighbor

gene id symbol gene type direction distance location
gk5 gk5,LOC108442893,LOC108442898 coding downstream 270721 20450448 ~ 20461880 (-)
ppp1r7 ppp1r7,LOC107700558,LOC107710611,LOC107677693 coding downstream 288172 20436489 ~ 20444429 (-)
ubxn7 ubxn7,LOC107677685,LOC107710610,LOC107563300 coding downstream 299059 20422172 ~ 20433542 (-)
LOC117599977 NA coding downstream 357930 20370971 ~ 20374671 (-)
LOC113546384 LOC108280310 coding downstream 381947 20338178 ~ 20350654 (-)
amy2a LOC107719254,LOC107586833,LOC107664453 coding upstream 16090 20774032 ~ 20780151 (-)
abca4b abca4 coding upstream 135801 20893743 ~ 20943796 (-)
LOC113524969 NA coding upstream 233945 20991887 ~ 20995639 (-)
eif3k eif3k coding upstream 363783 21121725 ~ 21134401 (-)
LOC113525403 NA coding upstream 380733 21138675 ~ 21147038 (-)
G323850 NA non-coding downstream 36446 20662755 ~ 20696155 (-)
G323877 NA non-coding downstream 60154 20671770 ~ 20672447 (-)
G323876 NA non-coding downstream 62426 20669688 ~ 20670175 (-)
G323873 NA non-coding downstream 66411 20665340 ~ 20666190 (-)
G323867 NA non-coding downstream 76770 20654294 ~ 20655831 (-)
G323898 col11a1b,LOC108280296,LOC108411368,LOC106569819,LOC107710593,LOC107680048,LOC107745694 non-coding upstream 62547 20820489 ~ 20821095 (-)
G323923 NA non-coding upstream 106523 20864465 ~ 20864950 (-)
G323907 NA non-coding upstream 174892 20932834 ~ 20946068 (-)
LOC117599936 NA non-coding upstream 223496 20981438 ~ 20990308 (-)
LOC117599984 NA non-coding upstream 381428 21139370 ~ 21146706 (-)
sh3glb1b sh3glb1,LOC108280317,LOC107700566,LOC107677816,LOC107732941,LOC108414852,LOC107553268,LOC102780267,LOC107382675,LOC103377018 other downstream 18584 20666291 ~ 20714017 (-)
LOC113546455 atr,LOC104958464,LOC107677746,LOC107700496,LOC107576458 other downstream 263032 20462015 ~ 20469569 (-)
LOC113546371 NA other downstream 320795 20384201 ~ 20411806 (-)
G323726 NA other downstream 536929 20195294 ~ 20195672 (-)
kdm4ab kdm4a,kdm4ab,LOC108280529,LOC107564389,LOC107684932,LOC107700543,LOC107551714,LOC107743373 other downstream 1225404 19476112 ~ 19507197 (-)
G323902 NA other upstream 70084 20828026 ~ 20830104 (-)
LOC113524960 LOC108280415 other upstream 188194 20946136 ~ 20976372 (-)
G323963 actn4,LOC102780626 other upstream 294265 21052207 ~ 21097709 (-)
si:ch1073-429i10.3 h3f3b,H3F3A,LOC105909691,LOC107388308,LOC107572204,LOC101073377 other upstream 377176 21135118 ~ 21137825 (-)

Expression


Co-expression Network