LOC117599965 (LOC108280683)


Basic Information

Item Value
gene id LOC117599965
gene name LOC108280683
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 16952977 ~ 16956560 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034314649.1
TATAGAGCTGAATTTGAAACCTTGCACACAAATTCAGGCCATGGGATACAATTTCAATCATTCAACTACAAAACTTCATGTACAAATTCAAACATAAAAATTCctatttgtaaaatgtaaaattcagaTTGTAGCAGCACTTTTCTCATTGCGTAAGCAGAGAGGTGATGTTTGGTATTCATCTGATTCCTAATTTCATATTCTCatcatgctttttttgtctgtttgtgttcAGAAATGCAAGCCCCTTTTCGTTCCTGCTGATCCTGATGAGCTGCCCGGTGTTGACGTCCATCCATACTTCTCACTGATGGTCCTGAGGAGAGCCATCACAGAGCTGAGAGAGCGAGTGAACGATGTGTGCGACAGGGAGTTAGCCAGGATCTCGGATTTAATTAAAGATGAGCAGAGTCTGTCGGCTGAAAGCACTTCCCCTGTCCCTGTATGTCCTGAAATAGtttctccTGTGAAAAGTGTGGACCAAACACAAAGCGAGCCAAAGACCAGAGCCGACTTTTTACAGTTCTGCTGTGAGGTGACGTTGGACCCAAACACTGCCAACTCCTACCTCTGCCTTTCAGAGGGGAACCGGAAGGTCAGCACCTGCTACGAGTCCCAGTACTATCCGGAACATCTGGAGAGATTCAGTGGCTGGGCTCAGGTGCTGGCCAGGGAGGCCGTCTCCACGcgctgttactgggaggtggagtggagCGGCAGTGGTAGGATCGGTATCGGAGTTTCTTACAAAGGGATTAACAGGCATGCTGGGAGCACTGACGGAAAACTGGGCTGCAATTCCAAATCATGGATTTTGAACCTTTCCGATGGCCATTGTACATTTCAGCACAATAAAACCAAGCTGGAGATCCCATCTCCTATTTCAGCCAGGATAGGAGTGTATGTAGACCACAAGGCAGGGATTCTAGCCTTCTATTGCATCTCTCCGAGAAGGGACTCTATGACCTTGCTGCACAGGATACAGACGACTTTCTCCCAGCCTCTGTACCCCGGATTTTGGCTTGGCCTTGGTTCCACACTCAAACTGTGCTCCATACTTAACTTCACAGCTTAGAGAAGGGGGAATCCACAAAGCATCTTATGCTAGCAAGTGGACTTGTGGTACCTTTACTATTTAAAACCAAATGTGTTCAGATTTACATAGGAGACTGGTCTGGCCAGGTTGTATTCCTGAACTGACCCACAGGCTAGAAAACCAAGAAGTgaataaaagtattatttgaAGGTAATCAGTAAGCTTAGGTAGCTAACTGATGTAAACATGACAGCTGTTTAAACTTGGCAACTTGCATGAATTTTGCAAGATCTGACAGCATGTTTACCAAGTAGCCATAATCAAAGCCATCCTAGAAGAAATCCCATTGGTGAAAATTGATGACAGATATAAGGTGCAGTTAAAGATATTAGGTGCAATTAACATCAGATTTTGGTCCAAATCTAAATTGAAAAACATCagatttaatgtgatttttgttGTTCACATGGCCATAAAAAGGAaatctatataatatatgaaGGAGAAAAGCCTCAGATTTGGGTGAGGcatgaaactaaaaaaaattatcagaCACCAATATGAAAAGGCTCATGTCTTCAAGGACAAACATCATGCCACTCATTCAACGAGCTTCATCAGTTGTATTAAGATCCGACACCATGTTTACCACATAGTCATAACCAAGGCCATCTGGAATTCCCATCGGCGCAAATTGATGACAAAGATTAGATGCAAATGAATGGACATGAAAGTCAATACTTTTGACCTGATCATTCATCTTGAAGTTGCATTGCCATGCATCAGATTTCAGGAACAGCTGTGGTCCAAATCAGAACTGATTTTCTTTCACACAGtcataaaaaaaggaaatctgtATCACATTTGTGGGGGGAAACAACTCAGATTTCAGTGAAGTGTGAAATCATAATAAATATCTAACTAACCTTAACAGGCTAATCTCTTTAAGAATAAACGTCTTTTTGCCTTGAAGATGTTTTGCCACgccagaggtgccaacattg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034314649.1 True 2040 mRNA 0.42 4 16952977 16956560

Neighbor

gene id symbol gene type direction distance location
ftr67 LOC108280685 coding upstream 5631 16941842 ~ 16947346 (+)
si:ch73-52e5.2 LOC108280810 coding upstream 14303 16935805 ~ 16938674 (+)
them6 LOC108280811,LOC107757799,LOC108410858,LOC107600265,LOC107655852,LOC107599286,LOC107663514 coding upstream 15489 16931308 ~ 16937488 (+)
LOC113546333 NA coding upstream 70219 16873882 ~ 16882758 (+)
LOC117595734 LOC108261605,LOC108280611 coding upstream 84031 16860823 ~ 16868946 (+)
ghrhra LOC108280336,LOC108433063 coding downstream 19363 16975923 ~ 16991112 (+)
xcr1b.1 NA coding downstream 109641 17066201 ~ 17071957 (+)
xcr1b.2 NA coding downstream 119170 17075730 ~ 17081658 (+)
cntnap2b cntnap2b,LOC108280767,LOC108433079,LOC107713665,LOC107757823,LOC107599243,LOC107663527,LOC107656139 coding downstream 282366 17238926 ~ 17293166 (+)
cul1a LOC108280768,LOC108433080,LOC105024245,LOC106599302,LOC106569218,LOC107663526 coding downstream 338604 17295164 ~ 17311204 (+)
G321602 NA non-coding upstream 59953 16892813 ~ 16893024 (+)
G321591 NA non-coding upstream 93399 16792714 ~ 16859578 (+)
G321582 NA non-coding upstream 160880 16750160 ~ 16792097 (+)
G321704 LOC108410862 non-coding downstream 2185 16958745 ~ 16960734 (+)
LOC117599934 NA non-coding downstream 569011 17525571 ~ 17537160 (+)
G322127 NA non-coding downstream 674654 17631214 ~ 17631512 (+)
G322146 NA non-coding downstream 765378 17721938 ~ 17786701 (+)
G322233 LOC108280496 non-coding downstream 897988 17854548 ~ 17855258 (+)
LOC117599970 LOC108280611,LOC108261562,LOC108261692,LOC108261605 other upstream 93295 16838768 ~ 16859682 (+)
LOC117595733 LOC108280611,LOC108261562,LOC108280614,LOC108280616,LOC108261605,LOC108261692 other upstream 159279 16791402 ~ 16793698 (+)
LOC117599973 LOC108280611,LOC108261605,LOC108261562,LOC108261692,LOC108280616 other upstream 164009 16756631 ~ 16788968 (+)
LOC117599972 LOC108280611,LOC108280616,LOC108261562,LOC108261605,LOC108280614,LOC108280615,LOC108261692 other upstream 204637 16742805 ~ 16748340 (+)
G321257 LOC108280695 other upstream 820613 16131335 ~ 16132364 (+)
fuz fuz other downstream 522274 17478834 ~ 17483677 (+)
egfra egfr,LOC107747514,LOC107691124 other downstream 614089 17570649 ~ 17636609 (+)
npc1 npc1 other downstream 632512 17589072 ~ 17666213 (+)
si:ch211-162e15.3 LOC108280563 other downstream 1269361 18225921 ~ 18227233 (+)
pex5lb pex5lb,LOC108280742,LOC108440867,LOC107653517,LOC107564246,LOC107660316 other downstream 1437463 18394023 ~ 18430022 (+)

Expression


Co-expression Network