oc90


Basic Information

Item Value
gene id oc90
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 7957043 ~ 7973996 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034314657.1
tGTGCTGTAAGACTAGGTCTTCGCTTATTTCTTGACTTCATCTGTGTTTGCTGCAGGTGTGAGCATCTCAGGATAACCAtgctggtgatgtcactgttcCTGCTATCCACATTCCAAAATGTGCAAAGCACTTATGTGTTCTGCCCAGATACAAATGACCTCAACACAGATCATCTTCTGCTAGATTGTCTGGGAGAGCGGTTCAACTGGCTTTATTCAGTGTTTGATAATTTGCCGTCTTTGGTGGAGTTTGCTCTGTGGATGCGCTGTGAGACTGGTGTATGTCCAACTGATCTTCAAGGCCACAGACACTACTGCAGCTATATAAGCATCCAgaatacaacacacactccagcaccCAGCGATACACTCGACTGgtgctgcTTTGACCATCAAAGATGCTATCGGGAACTAGAAGAAATACATTGCAGAAAgacaccaccaacacacaccaattATACCTGCTCCCATCTCACCAACAACAGCTGTgATTCACTTGACTTGTGTGAACAAGGATTCTGTTTGTGTGACCAAGAAGCCATAGCCTGCATTGGCAACAACTCCCACTCTGTGCTTCCAAATCAGCATGAGAAAAAGGATTTAAACAGCCCAGGATTCACAGGTTTTCCTTATAACAACACCATTGTCAGTGAGGTGCTCAACAGAACAgaATGGATGGAAGCATCACCACAGATATCGGATAAGGACATAATGCTTGATGAACTGGATATTACGCTGAATGGAACTATGGGTAACTTCACTGAGGATTTTTTACTGACAAACAACACACTGAAGAACCAGAGCCAGAGTGCAGGATACTCTGGGATACCTCCATCAGTTACACTTTTCCAAAATGGCACTGAAGAGGACGAGGAAAATGATTTGGCCGCAAATACCTACAATGCTACAGGTTTACCTTTGAATGACAAGGAGAATGCAGATTTAACACCAGtgacaaaaccacaaaaacctCATGGTGTGTATcctgaaacacaaacatacacgcCTCACTCAGAGACAacgaatgcacacacacatccactggACTCCGCCACTGCAGTTCCACCTGCACTGTCACATGCCTGGACAAACGATTTACCAAGAGAGCTGGAAAAAGATAGAGGTAAGGATGAGGAGCTCCAGAATGGCACAATGCTCCTCCAAACTACAgcagtgacctttgaccctaCAGCTCCACACACATCAGGCAACCCTGATGACAAGACCACAGCATATTCAGAACTGAAcacttcagagacagagagcaatgAGATGGAGACCAAGGACGAGTCAAGAGAGTCGAGAGAGAAGGTTGAAGATGGGGAGAGTGCAGAGAGATCACATGCTGAGGAGAAAGAACACAAAAATGAGGAAGAATCTAAAATGTCACATGGCAATCATATCCCTATGGTATCCACTCCATCTGGGGCAGCAACCAGTCAAATCCTGTTTCACCCAGTAACCCTGTCTCTGCCAGCCAAACAAAACACGGAGGCTATGGCCACGCCTACACAGCTGTCTCCTGAGGATAACAGCGATGAAAGCGGGGAAAAGATAAGCAGCGAAGATGAACAGATAACAGAAATGTTGCAAGTCACCACCCCAACCAAGATCACTGAAGATCAGGCCAAACTGTTTGAGATACACACACcagcaagcacacacacacacaccaccatacaGCGTCTCTCAGAAGACAAGGAGGCGACAGACACAGAAAGTCAGGATGAAGAACAACACAGTGATGAAGACAATCTGCAGATGAGTGCAGAAATACAGGACAGCAttgctggtcacatgaccacactGAATGCCATCACGGTCTCACCCATGACCTCTTACCTCATACCTAAAAATCCTACACAACACATAGAAGTCAAAGCTAACAGCCCATCACAAGCAACCTCGACAATATCCCCGAAAACAACAAATATGCCAGGAACACACCAAACATCACACagactcaccacacacacttcacttaccAGACCATTCACACCAGGCACATTTCAAGCACAGACAACTTTCACAAAATCACCACACACACCGTACACCTCACATTCACTACTTATGAAGCCTACAGTCACTCACAAAACCTCGGTGACGCTTCACCAAAGAGTCCCTGTTACACACAACCACAAAACTGAGCCTCGCCCACTCCACACTCCCAGGGTTCCTCACACACCCAAACCCAACACCTCCCCGCCTTCATCAGCCACCACTACACAGGGCTATtctgaagaagaggaggaggagaaacatgaagagatgaagagagagctGATGGACAGTTCCCAGGAGGCAGAGTCAAGAAAGCCTCTTCAGCGAGCAAAGCGAATGATGCCACTCTTCGCCTGGCCACTGCTGGAGGCAGCAGGACTGTCTGAGATTCTGCTTCACTCACAATCAGATGAGTGCAGCATGACATTTACCCAGTACAGCTCCACTGGAGCGGTAATTGGGGAGTTTGCAGCGCTGGGGGAAATGTTGCACTGCCTAACCGGCCGCTGTCCTCAAGAGTACGAGCACTACGGCTGCTACTGCGGACAGCAGGGTAGCGGAATCCCTCAAGACCACCTggaccaGTGCTGTTTCTTTCATCAGTGTTGTCTGGAGCAGCTCACATTGCTGGGCTGCAGGAGAGACAGGAAACTCAACATTCACATCAACTGCCACAACGGCAGACCCCAGTGTCTgggagtaagtgtgtgtgatcgactacagtgtgtgtgtgatcgcaCCACGGCCGAGTGCATGGCAGCATCTCATTTCAACCACTCCATCACCTCCCAGTGTTCTGGTCCTCGGCCCCCCTGCACGCGCAGACCAAGCCCACCACCACAACGCGCCGATTCTGATTCCAGCCAGGAGAGTTCAGAAACTGCCGAATCAGATCTACAAACATCTCAGAaacgtccacacacacacggtgaacCTGGACAGACCAAGCCGGCAGGTGGTGCCAGGGAGCAAGAGGGTAAGGATGTAGAACAACCAGAAGCAGAGGaggacaaagaagaagaagaagaagaaaaagaagaagaggaaggaggaggagaaaatgaagaaatctAGAAATATGAGTCAAAATCACATATAAATGGCTATAGTACGGTGTAGTGCACATCTAGTGCACCACATAAACAATACTGATGGATGTTCACACATCCTTACAACAAGTAAAAGACAAGACTAAACTAAAATTCCACACCATTAAGGtgcattaaaatgttaatgGCACAGTGATtggcagagattttttttttacttgcaagAGCAGTTGCTGTTCTCCAGTATGTTGTATTTCCTCATATCAGCTAGTCTCAGTGAATTCTAGCTCAACGGCaggtagctaacgttagctgCAGTTGAACACAAACTCCTACTTCTTGCAAGTTAATCTGTATTTAGTTTCTGTAtctagtgtgtgatgtgtttccaaaacaaatttaattatatactgtaaGAGCCTAAAAAATCAATTCTGAAAAGAAATTCAAACATAAGGCCTATTGAGGACTTGACTTATTTCAGGCAAATTAAGACTATGTAAGGATCCCTATTTACCCTGTTATAGATATTTCTTCAGTCAACTAATGAgcagaagaaaaacactgaacagaACATGACACGcttattttaactttaaagctaaacaaaaatCATTAGCATGGAAAGAGAGTGCTTGATTAACCTGAGAAGCAAAGCGTAATGAAacattgtgtatttgttttaaatgtttccttttttttaattcaaaatgaCCAAgttctcacacaaacacttttttaaaataaaatcacacttaATAGGTGCTACTGCTTTGAATATAAAATCTTTATTGATATTGTTTGATCTTGTTGTGCACAGAAAGTGACTGAGCATCCAACGCCCTACTAAACAGAAATTTGGCAAAGTTTAAAGCATCTTAGTggttctgttgttgttttttgatacgaataaacatttatattgaaAAGTGAACGCCATAGCTGGTGATTATGATTGTACATATTGAAGGCTGCATTGCTTATCATATCACGTGCATgtacgaacacacacacacacacaaacatacacacaaacacacacacacacacacacacacaaacaca

Function

NR:

description
PREDICTED: uncharacterized protein LOC107749192

GO:

id name namespace
GO:0048840 otolith development biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034314657.1 True 4115 mRNA 0.45 15 7957043 7973996

Neighbor

gene id symbol gene type direction distance location
LOC113543381 hhla1 coding upstream 3707 7941078 ~ 7953336 (+)
kcnq3 kcnq3,LOC107749193 coding upstream 21950 7883895 ~ 7935093 (+)
lrrc6 lrrc6,LOC108280282 coding upstream 75326 7859024 ~ 7881717 (+)
trnau1apb tsp1l,LOC108428349,LOC107680226,LOC107589802,LOC107718075,LOC107722553,LOC107688461,LOC107585172 coding upstream 344259 7603361 ~ 7612784 (+)
LOC113543252 LOC108280221 coding upstream 381663 7568121 ~ 7575380 (+)
adcy8 adcy8,LOC107569488,LOC107557810,LOC107659784,LOC107663336 coding downstream 96569 8070565 ~ 8130482 (+)
myo10 myo10,LOC107602648,LOC107749189 coding downstream 219759 8193755 ~ 8257661 (+)
dip2cb LOC108280427,LOC108428306,LOC107721715,LOC107663347,LOC107659260,LOC107749093 coding downstream 301582 8275578 ~ 8327509 (+)
esyt2a esyt2,LOC106599471 coding downstream 360828 8334824 ~ 8379466 (+)
slco5a1b LOC108280428 coding downstream 412516 8386512 ~ 8422245 (+)
G316419 NA non-coding upstream 227306 7703722 ~ 7729737 (+)
G316405 NA non-coding upstream 267078 7689377 ~ 7689965 (+)
G316398 NA non-coding upstream 285184 7671572 ~ 7671859 (+)
G316397 NA non-coding upstream 285523 7671290 ~ 7671520 (+)
G316396 NA non-coding upstream 286484 7670331 ~ 7670559 (+)
G316630 NA non-coding downstream 70497 8044493 ~ 8044697 (+)
G316741 NA non-coding downstream 284833 8258829 ~ 8259070 (+)
LOC113543009 NA non-coding downstream 285262 8259258 ~ 8261712 (+)
G316752 NA non-coding downstream 357510 8331506 ~ 8331786 (+)
G316754 NA non-coding downstream 358428 8332424 ~ 8333531 (+)
fitm1 fitm1,LOC107688462,LOC107585187,LOC107722554,LOC107589905 other upstream 200082 7751694 ~ 7756961 (+)
G316413 NA other upstream 261124 7695534 ~ 7695919 (+)
crsp7 LOC108280732 other upstream 358879 7582313 ~ 7598164 (+)
G316001 NA other upstream 821542 7133459 ~ 7135501 (+)
LOC113543138 LOC108280551,LOC108414043,LOC105006373 other upstream 1012053 6937340 ~ 6944990 (+)
G316744 NA other downstream 289343 8263339 ~ 8264061 (+)
G316745 NA other downstream 294713 8268709 ~ 8269198 (+)
LOC117599964 LOC107387363,LOC107676291,LOC107756568 other downstream 837599 8811595 ~ 8813410 (+)
G317390 NA other downstream 1438327 9412323 ~ 9415164 (+)
pip4p1a tmem55b,tmem55ba,LOC106600488 other downstream 1984997 9958993 ~ 9977916 (+)

Expression


Co-expression Network