LOC113543091


Basic Information

Item Value
gene id LOC113543091
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 7442104 ~ 7453708 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034314700.1
CAGTGATCTATGAAACACATCTATCGCCATCTCACGGCTATTTTGAACTGAAGCAGTGCAGCCATTGCTCTGAGAAATGCCCAAGGAACATCACAGCGAATGGCGAGGTGATAATGCAAGCTGTAGAGCAGCTGAAGAAAAGGGGCATGGTGGACAAGGTGACGGACATGACGATTCCTTCAGCGCACCGTCCCACAGATCTGCAGATGAAGCAGACTCTCCCAGAAAAGATTCCGATCAATCCTGTTTTCAGTCGTTCAAAGAGGAGTACGAGGAGGTTGAACGCACTGCACCACTAACCACCCGCAAGAAGTTAACACGAAAGAGGTTCAAAGGTCAAAATAGAGTTGGGCAGCAGCACAGGAGTAACAGGGTACCTGTCCTCGCCCCCCTCAAGCTCCTAGATGGCACCAGTCAACGCATAGCATCAGCCCATCAGAGGCACAACCAGCAGCTGAGCAATGAGGTGTGGGATCTGCAGCGGCAACTGCGCACCACCGTGCAGGAGAATCGGCTACTCCAGCGTCTACAGTGCAGACACGCAGCTGCGCTGCTGCACTTCCAGGACATCCAGGGCAGCCTGCCCCAACTGCTCCATAATCACAGCAGTGAGGTTAGAGCACTCCAGGAGCTCCTGCGCAGAGCTAAAACTCACATCAACCTTCTCGCACGCAAGCTGCGGAGCACAGAGAGCGCACTGCTGCACACCCGCGACACGCTGCAGTGGCTACAGTGCCTCAGCAAGGACCAGAACCTGGAGGAGCGAGAGACCCTGACACAGCgcctcactgtactcactgtggacttggagaagaagaacaaaaggaTTCAGGATCTGGAGATAAACCTTGCGCTGAGCACTGCATCATTTAATCGTCAAATGAGCTCGGAAATGAGAAAGACGATGGAAGCCCGAGACCTGTCCCGACATCTGGAGGAATTAATAAGTAATTTAATGCAGAAAATCAAGGGGATGGAGAAAGAATTGGCGAACCATGATATCTACTCGCACAGATTTCTGAAAGGCAGTTTAAAGAAAGGGACAAAAGAAAGCAAATTTGTTCAGACAGAACCTTTGTCACCTATAGTACTTGAAACTCCTCCTCTCCTAATGCAGACAGAGTATCCACAAAAAGACAATGAGAAGAAGCCTTGGTTTCACTTACAGGAGTTTGATGCCAGTGAACCAGCAAAGGACAGGAGCAGTGAGGACAAACTGATGCAGAAAGATAATGAGCAAACCTCCAATGAGACACCTCCTGCGACAGAAGAGACCAAATTAGTTCAAACTGAACCTTTGTCGTCTATAGCATTTGAAACTCCTCCTCTCTCACTGCAGATAAAGTATCCACAGAAAGACATTGAGAAGAACGCTTGGTTTCACTTACAGGGATTTGATGCCAGTAAACCAGCAAAGGACAGGAGCAGTGAGGACGAACTGACGCACAAGGAAAAGGAGGAAACCTCTAATGAGACACCTCCTGCGACAGAAGAGACCAAATTAGTTCAAACTGAACCTTTGTCGTCTATAGCATTTGAAACTCCTCCTCTCTCACTGCAGATAAAGTATCCACAGAAAGACATTGAGAAGAACGCTTGGAGATTTGATGCCAGTAAACCAGCAAAGGACAGGAGCAGTGAGGACGAACTGACGCACAAGGAAAAGGAGGAAACCTCTAATGAGACACCTCCTGACATTGGAAGGACTAGTGGCACTGATGGAATTAAGCTGGAGTATGATGCAGAGCAGGAAGAAATGACAGCCAACCTCACTCAGGACTTAGCATTTGAGGGGCACAATTCACAAGATAATAATGACCAGTTAGTTATCACTCAGTCACCGTCAACAAAAAAGGCCACCAAATCCCTAGGCAAGAATAGACAGCAATACATATTTAAAGAGACCATCCTGAACCTACACAGTGGGACACCTGCTTATGGAACAAGTCAAAGATCTGGACCAAGGTTCCACAGATGTAACAAACCCAAAGCCACTACCACCGTTCTTGACACTGGTACATATGACCCATCATTTTTTGTGCCAGCATCCACATCATCAATGAAGCAGGAGCCACAGCCAATAGTGAGGCCAAGCAATACCAAAAAGAACAACTTGATGAAGGAACTGTTTGGTCAAGTAAAATTGGTTGAGCAGATGCCTGATAATAAACTAGACGCTGGCACTAAATCCTCAGATCCAACTAATCTCAGAATTTAAGAAGTTAAGCCATGTGAAGGCTCTTATCTTAGCCTGTTTAATCAATA
>XM_034314701.1
CAGTGATCTATGAAACACATCTATCGCCATCTCACGGCTATTTTGAACTGAAGCAGTGCAGCCATTGCTCTGAGAAATGCCCAAGGAACATCACAGCGAATGGCGAGGTGATAATGCAAGCTGTAGAGCAGCTGAAGAAAAGGGGCATGGTGGACAAGGTGACGGACATGACGATTCCTTCAGCGCACCGTCCCACAGATCTGCAGATGAAGCAGACTCTCCCAGAAAAGATTCCGATCAATCCTGTTTTCAGTCGTTCAAAGAGGAGTACGAGGAGGTTGAACGCACTGCACCACTAACCACCCGCAAGAAGTTAACACGAAAGAGGTTCAAAGGTCAAAATAGAGTTGGGCAGCAGCACAGGAGTAACAGGGTACCTGTCCTCGCCCCCCTCAAGCTCCTAGATGGCACCAGTCAACGCATAGCATCAGCCCATCAGAGGCACAACCAGCAGCTGAGCAATGAGGTGTGGGATCTGCAGCGGCAACTGCGCACCACCGTGCAGGAGAATCGGCTACTCCAGCGTCTACAGTGCAGACACGCAGCTGCGCTGCTGCACTTCCAGGACATCCAGGGCAGCCTGCCCCAACTGCTCCATAATCACAGCAGTGAGGTTAGAGCACTCCAGGAGCTCCTGCGCAGAGCTAAAACTCACATCAACCTTCTCGCACGCAAGCTGCGGAGCACAGAGAGCGCACTGCTGCACACCCGCGACACGCTGCAGTGGCTACAGTGCCTCAGCAAGGACCAGAACCTGGAGGAGCGAGAGACCCTGACACAGCgcctcactgtactcactgtggacttggagaagaagaacaaaaggaTTCAGGATCTGGAGATAAACCTTGCGCTGAGCACTGCATCATTTAATCGTCAAATGAGCTCGGAAATGAGAAAGACGATGGAAGCCCGAGACCTGTCCCGACATCTGGAGGAATTAATAAGTAATTTAATGCAGAAAATCAAGGGGATGGAGAAAGAATTGGCGAACCATGATATCTACTCGCACAGATTTCTGAAAGGCAGTTTAAAGAAAGGGACAAAAGAAAGCAAATTTGTTCAGACAGAACCTTTGTCACCTATAGTACTTGAAACTCCTCCTCTCCTAATGCAGACAGAGTATCCACAAAAAGACAATGAGAAGAAGCCTTGGTTTCACTTACAGGAGTTTGATGCCAGTGAACCAGCAAAGGACAGGAGCAGTGAGGACAAACTGATGCAGAAAGATAATGAGCAAACCTCCAATGAGACACCTCCTGCGACAGAAGAGACCAAATTAGTTCAAACTGAACCTTTGTCGTCTATAGCATTTGAAACTCCTCCTCTCTCACTGCAGATAAAGTATCCACAGAAAGACATTGAGAAGAACGCTTGGGGATTTGATGCCAGTAAACCAGCAAAGGACAGGAGCAGTGAGGACGAACTGACGCACAAGGAAAAGGAGGAAACCTCTAATGAGACACCTCCTGCGACAGAAGAGACCAAATTAGTTCAAACTGAACCTTTGTCGTCTATAGCATTTGAAACTCCTCCTCTCTCACTGCAGATAAAGTATCCACAGAAAGACATTGAGAAGAACGCTTGGAGATTTGATGCCAGTAAACCAGCAAAGGACAGGAGCAGTGAGGACGAACTGACGCACAAGGAAAAGGAGGAAACCTCTAATGAGACACCTCCTGACATTGGAAGGACTAGTGGCACTGATGGAATTAAGCTGGAGTATGATGCAGAGCAGGAAGAAATGACAGCCAACCTCACTCAGGACTTAGCATTTGAGGGGCACAATTCACAAGATAATAATGACCAGTTAGTTATCACTCAGTCACCGTCAACAAAAAAGGCCACCAAATCCCTAGGCAAGAATAGACAGCAATACATATTTAAAGAGACCATCCTGAACCTACACAGTGGGACACCTGCTTATGGAACAAGTCAAAGATCTGGACCAAGGTTCCACAGATGTAACAAACCCAAAGCCACTACCACCGTTCTTGACACTGGTACATATGACCCATCATTTTTTGTGCCAGCATCCACATCATCAATGAAGCAGGAGCCACAGCCAATAGTGAGGCCAAGCAATACCAAAAAGAACAACTTGATGAAGGAACTGTTTGGTCAAGTAAAATTGGTTGAGCAGATGCCTGATAATAAACTAGACGCTGGCACTAAATCCTCAGATCCAACTAATCTCAGAATTTAAGAAGTTAAGCCATGTGAAGGCTCTTATCTTAGCCTGTTTAATCAATA
>XM_034314702.1
CAGTGATCTATGAAACACATCTATCGCCATCTCACGGCTATTTTGAACTGAAGCAGTGCAGCCATTGCTCTGAGAAATGCCCAAGGAACATCACAGCGAATGGCGAGGTGATAATGCAAGCTGTAGAGCAGCTGAAGAAAAGGGGCATGGTGGACAAGGTGACGGACATGACGATTCCTTCAGCGCACCGTCCCACAGATCTGCAGATGAAGCAGACTCTCCCAGAAAAGATTCCGATCAATCCTGTTTTCAGTCGTTCAAAGAGGAGTACGAGGAGGTTGAACGCACTGCACCACTAACCACCCGCAAGAAGTTAACACGAAAGAGGTTCAAAGGTCAAAATAGAGTTGGGCAGCAGCACAGGAGTAACAGGGTACCTGTCCTCGCCCCCCTCAAGCTCCTAGATGGCACCAGTCAACGCATAGCATCAGCCCATCAGAGGCACAACCAGCAGCTGAGCAATGAGGTGTGGGATCTGCAGCGGCAACTGCGCACCACCGTGCAGGAGAATCGGCTACTCCAGCGTCTACAGTGCAGACACGCAGCTGCGCTGCTGCACTTCCAGGACATCCAGGGCAGCCTGCCCCAACTGCTCCATAATCACAGCAGTGAGGTTAGAGCACTCCAGGAGCTCCTGCGCAGAGCTAAAACTCACATCAACCTTCTCGCACGCAAGCTGCGGAGCACAGAGAGCGCACTGCTGCACACCCGCGACACGCTGCAGTGGCTACAGTGCCTCAGCAAGGACCAGAACCTGGAGGAGCGAGAGACCCTGACACAGCgcctcactgtactcactgtggacttggagaagaagaacaaaaggaTTCAGGATCTGGAGATAAACCTTGCGCTGAGCACTGCATCATTTAATCGTCAAATGAGCTCGGAAATGAGAAAGACGATGGAAGCCCGAGACCTGTCCCGACATCTGGAGGAATTAATAAGTAATTTAATGCAGAAAATCAAGGGGATGGAGAAAGAATTGGCGAACCATGATATCTACTCGCACAGATTTCTGAAAGGCAGTTTAAAGAAAGGGACAAAAGAAAGCAAATTTGTTCAGACAGAACCTTTGTCACCTATAGTACTTGAAACTCCTCCTCTCCTAATGCAGACAGAGTATCCACAAAAAGACAATGAGAAGAAGCCTTGGGAGTTTGATGCCAGTGAACCAGCAAAGGACAGGAGCAGTGAGGACAAACTGATGCAGAAAGATAATGAGCAAACCTCCAATGAGACACCTCCTGCGACAGAAGAGACCAAATTAGTTCAAACTGAACCTTTGTCGTCTATAGCATTTGAAACTCCTCCTCTCTCACTGCAGATAAAGTATCCACAGAAAGACATTGAGAAGAACGCTTGGTTTCACTTACAGGGATTTGATGCCAGTAAACCAGCAAAGGACAGGAGCAGTGAGGACGAACTGACGCACAAGGAAAAGGAGGAAACCTCTAATGAGACACCTCCTGCGACAGAAGAGACCAAATTAGTTCAAACTGAACCTTTGTCGTCTATAGCATTTGAAACTCCTCCTCTCTCACTGCAGATAAAGTATCCACAGAAAGACATTGAGAAGAACGCTTGGAGATTTGATGCCAGTAAACCAGCAAAGGACAGGAGCAGTGAGGACGAACTGACGCACAAGGAAAAGGAGGAAACCTCTAATGAGACACCTCCTGACATTGGAAGGACTAGTGGCACTGATGGAATTAAGCTGGAGTATGATGCAGAGCAGGAAGAAATGACAGCCAACCTCACTCAGGACTTAGCATTTGAGGGGCACAATTCACAAGATAATAATGACCAGTTAGTTATCACTCAGTCACCGTCAACAAAAAAGGCCACCAAATCCCTAGGCAAGAATAGACAGCAATACATATTTAAAGAGACCATCCTGAACCTACACAGTGGGACACCTGCTTATGGAACAAGTCAAAGATCTGGACCAAGGTTCCACAGATGTAACAAACCCAAAGCCACTACCACCGTTCTTGACACTGGTACATATGACCCATCATTTTTTGTGCCAGCATCCACATCATCAATGAAGCAGGAGCCACAGCCAATAGTGAGGCCAAGCAATACCAAAAAGAACAACTTGATGAAGGAACTGTTTGGTCAAGTAAAATTGGTTGAGCAGATGCCTGATAATAAACTAGACGCTGGCACTAAATCCTCAGATCCAACTAATCTCAGAATTTAAGAAGTTAAGCCATGTGAAGGCTCTTATCTTAGCCTGTTTAATCAATA
>XM_034314703.1
CAGTGATCTATGAAACACATCTATCGCCATCTCACGGCTATTTTGAACTGAAGCAGTGCAGCCATTGCTCTGAGAAATGCCCAAGGAACATCACAGCGAATGGCGAGGTGATAATGCAAGCTGTAGAGCAGCTGAAGAAAAGGGGCATGGTGGACAAGGTGACGGACATGACGATTCCTTCAGCGCACCGTCCCACAGATCTGCAGATGAAGCAGACTCTCCCAGAAAAGATTCCGATCAATCCTGTTTTCAGTCGTTCAAAGAGGAGTACGAGGAGGTTGAACGCACTGCACCACTAACCACCCGCAAGAAGTTAACACGAAAGAGGTTCAAAGGTCAAAATAGAGTTGGGCAGCAGCACAGGAGTAACAGGGTACCTGTCCTCGCCCCCCTCAAGCTCCTAGATGGCACCAGTCAACGCATAGCATCAGCCCATCAGAGGCACAACCAGCAGCTGAGCAATGAGGTGTGGGATCTGCAGCGGCAACTGCGCACCACCGTGCAGGAGAATCGGCTACTCCAGCGTCTACAGTGCAGACACGCAGCTGCGCTGCTGCACTTCCAGGACATCCAGGGCAGCCTGCCCCAACTGCTCCATAATCACAGCAGTGAGGTTAGAGCACTCCAGGAGCTCCTGCGCAGAGCTAAAACTCACATCAACCTTCTCGCACGCAAGCTGCGGAGCACAGAGAGCGCACTGCTGCACACCCGCGACACGCTGCAGTGGCTACAGTGCCTCAGCAAGGACCAGAACCTGGAGGAGCGAGAGACCCTGACACAGCgcctcactgtactcactgtggacttggagaagaagaacaaaaggaTTCAGGATCTGGAGATAAACCTTGCGCTGAGCACTGCATCATTTAATCGTCAAATGAGCTCGGAAATGAGAAAGACGATGGAAGCCCGAGACCTGTCCCGACATCTGGAGGAATTAATAAGTAATTTAATGCAGAAAATCAAGGGGATGGAGAAAGAATTGGCGAACCATGATATCTACTCGCACAGATTTCTGAAAGGCAGTTTAAAGAAAGCGACAGAAGAGACCAAATTAGTTCAAACTGAACCTTTGTCGTCTATAGCATTTGAAACTCCTCCTCTCTCACTGCAGATAAAGTATCCACAGAAAGACATTGAGAAGAACGCTTGGTTTCACTTACAGGGATTTGATGCCAGTAAACCAGCAAAGGACAGGAGCAGTGAGGACGAACTGACGCACAAGGAAAAGGAGGAAACCTCTAATGAGACACCTCCTGCGACAGAAGAGACCAAATTAGTTCAAACTGAACCTTTGTCGTCTATAGCATTTGAAACTCCTCCTCTCTCACTGCAGATAAAGTATCCACAGAAAGACATTGAGAAGAACGCTTGGAGATTTGATGCCAGTAAACCAGCAAAGGACAGGAGCAGTGAGGACGAACTGACGCACAAGGAAAAGGAGGAAACCTCTAATGAGACACCTCCTGACATTGGAAGGACTAGTGGCACTGATGGAATTAAGCTGGAGTATGATGCAGAGCAGGAAGAAATGACAGCCAACCTCACTCAGGACTTAGCATTTGAGGGGCACAATTCACAAGATAATAATGACCAGTTAGTTATCACTCAGTCACCGTCAACAAAAAAGGCCACCAAATCCCTAGGCAAGAATAGACAGCAATACATATTTAAAGAGACCATCCTGAACCTACACAGTGGGACACCTGCTTATGGAACAAGTCAAAGATCTGGACCAAGGTTCCACAGATGTAACAAACCCAAAGCCACTACCACCGTTCTTGACACTGGTACATATGACCCATCATTTTTTGTGCCAGCATCCACATCATCAATGAAGCAGGAGCCACAGCCAATAGTGAGGCCAAGCAATACCAAAAAGAACAACTTGATGAAGGAACTGTTTGGTCAAGTAAAATTGGTTGAGCAGATGCCTGATAATAAACTAGACGCTGGCACTAAATCCTCAGATCCAACTAATCTCAGAATTTAAGAAGTTAAGCCATGTGAAGGCTCTTATCTTAGCCTGTTTAATCAATA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034314700.1 True 2265 mRNA 0.47 12 7442104 7453708
XM_034314701.1 False 2253 mRNA 0.47 12 7442104 7453708
XM_034314702.1 False 2253 mRNA 0.47 12 7442104 7453708
XM_034314703.1 False 2043 mRNA 0.48 10 7442104 7453708

Neighbor

gene id symbol gene type direction distance location
dscamb dscamb,dscam,LOC108280204,LOC108413375,LOC107562808,LOC107726116,LOC107561601,LOC106612992 coding upstream 47640 7259272 ~ 7394464 (+)
atm atm,LOC106522150 coding upstream 238904 7145401 ~ 7203200 (+)
meis3 meis3,LOC107677073,LOC107598789,LOC107741525,LOC107726131 coding upstream 433366 6997484 ~ 7008738 (+)
LOC113543373 prss16 coding upstream 459458 6971552 ~ 6982646 (+)
ech1 ech1,LOC107598793,LOC107677099 coding upstream 472156 6961943 ~ 6969948 (+)
brwd1 brwd1,LOC108280674,LOC108410482,LOC107677081,LOC107567576,LOC107730991,LOC107655817,LOC107747676 coding downstream 12925 7466633 ~ 7490001 (+)
LOC117595729 NA coding downstream 35662 7489370 ~ 7493819 (+)
rbp2a ret2,rbp2,LOC103044214,LOC108410483,LOC108239352 coding downstream 46713 7500421 ~ 7504697 (+)
foxl2a foxl2 coding downstream 99853 7553561 ~ 7554925 (+)
LOC113543252 LOC108280221 coding downstream 114413 7568121 ~ 7575380 (+)
G316288 NA non-coding upstream 8680 7426461 ~ 7433424 (+)
G316000 NA non-coding upstream 312227 7127691 ~ 7129877 (+)
G315968 NA non-coding upstream 408298 7033565 ~ 7033806 (+)
G315901 NA non-coding upstream 506927 6934949 ~ 6935177 (+)
G315894 NA non-coding upstream 526563 6914261 ~ 6915541 (+)
G316317 NA non-coding downstream 51371 7505079 ~ 7505404 (+)
G316339 NA non-coding downstream 111378 7565086 ~ 7568068 (+)
LOC117599993 NA non-coding downstream 194996 7648704 ~ 7650020 (+)
G316396 NA non-coding downstream 216623 7670331 ~ 7670559 (+)
G316397 NA non-coding downstream 217582 7671290 ~ 7671520 (+)
G316001 NA other upstream 306603 7133459 ~ 7135501 (+)
LOC113543138 LOC108280551,LOC108414043,LOC105006373 other upstream 497114 6937340 ~ 6944990 (+)
G315581 cldnj,LOC108280332,LOC108424024,LOC107749063,LOC107680085,LOC107551261,LOC107703975 other upstream 1214864 6226717 ~ 6227240 (+)
shox2 shox2,LOC107720426,LOC107598669,LOC107703017,LOC107709009,LOC107661335 other upstream 1540538 5894504 ~ 5901566 (+)
si:dkeyp-97b10.3 LOC108280535 other upstream 2071207 5341009 ~ 5370897 (+)
crsp7 LOC108280732 other downstream 128605 7582313 ~ 7598164 (+)
G316413 NA other downstream 241826 7695534 ~ 7695919 (+)
fitm1 fitm1,LOC107688462,LOC107585187,LOC107722554,LOC107589905 other downstream 297986 7751694 ~ 7756961 (+)
G316744 NA other downstream 809631 8263339 ~ 8264061 (+)
G316745 NA other downstream 815001 8268709 ~ 8269198 (+)

Expression


Co-expression Network