LOC113546333


Basic Information

Item Value
gene id LOC113546333
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 16873882 ~ 16882758 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034314718.1
CAGAAGTAGGAAGGGTATTTGTCATATGAGTCTCTTAGAAACATGAGCTTTTACTCACTAGTTGGTTCTGGAACTCTCTTTGGGTTATTCCTCTGTATATCAGATGTAGAGAGCATGAGGACACTAAAAAATGTTGCTGCAAAATATGGAGGATCTGTCACTATTCCATGTCTTTATGAAAAGCAATACAAAGCAAACCCTAAATTCTGGTGCAAAGGGTACTATTGGGCTTCCTGCAGCATAGTAGCCTATGCAAGCACAAATGGAATTACATCATTGGCTGATCATCCGGCGCAGAATATGTTCACCGTGGAACTGAACCCTGTCTCTGATTCTGGAACATATTGGTGCGCTGCAGAAATTGGAAGTAAATGGGACCCAGATGACCGTAATTATTTGTACCTGACGGTTAGTCAAgATCCTGATCTGTCTGTGATGGAGAGCAGAGTAAAAGGTAATGAAGGTGGAAGCGTCACAGTCCAGTGTTTCTACAGCACTGCGTATTGGAATAAACAGAAGCAGTGGTGCAGATTCAAAGATGAGTGGTGCAACACAGTGAGGAAGACTTCCACAGCCCAGACTTCAGCAGTGCAAATCACTGATAATGGGAGCTCCTTCAGAGTGCAGATGAGTAATCTGAAGGAGAGTGATGCTGGCTGGTACTGGTGCAGTGCAGGAGATCTTCAGGTTCCTGTTCATATCAGTGTTGGTGCTGAAGCTCCAGGTCTGCCTGATAACCAAAAGGAAGATAAAGTATCAAATTTTGAAGACACTATACTGGCTTTTTGCATCATCTCTGGGCTCTTGTTGGTGCTCATGGTGGTTGGTTTGGTCATCTGGAAActtaaacagaaacaaaCTGGACAGTTAGTCACAAACAAAGGATATGACCACAGTCTGATAAACACTGATGTGGATTATGGTGCTTTCGTTTTCAGACAGCCGAAGAGCAATCCAAACCAGAGTCCCAAAGCACGTGAGAATGCGGTGACATATAGCACTGTGGCAGATGAACAATGCAAGGCCTCATCAGCTTCTGAGCCGGAAGTCACCTACAGCACACTCAAAATCTCTCACAATCCAACAGTCTCTCCCGTTCCCCTTAATGATAAGGTCATCTACAGCTCAGTAAAACATCACTAATGAGAGGCTACTGAAAAAACACCTGCAGTGGAAAGTCTTTGCAAGCAGTGGTGTactacacacgtttttttttgtgttcctCCATCCAGAATCTGGAATCCTTTACTGTGAAATAACATGAAGGCAGATGGATTTGTcttttctgttaatttttttttttttttttgcccaccataaacttttctttttgtgtcAGAAAGAGCACGTCTCTGTGGAGGAAGTTATtgttttgtctgtctttttttttttttttttttttttttttttttttttctttcagtagaCAGCAGAACATTATGACAAACTGAAtttacagaagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtggttgattttttttatttttttttttaacaatgattTCAGGAATGTATCTACTGCCAAGGTATATCCAGTAACTAAACATTCATTTCTTaacatagtatttt
>XM_034314719.1
AGGTGTGACCCAGATTATCTGGTACCTGCTGGCCCCACTTTTGCTACTGCCGATGATTGTCAACATCTGCATCCTGCAAAGAAACATCtgcaaagaaatgcaAAGCAGAGACTCAGACCAGGACCAGAGCAATGACACCACTGTTCATACAATGTAGAGAGCATGAGGACACTAAAAAATGTTGCTGCAAAATATGGAGGATCTGTCACTATTCCATGTCTTTATGAAAAGCAATACAAAGCAAACCCTAAATTCTGGTGCAAAGGGTACTATTGGGCTTCCTGCAGCATAGTAGCCTATGCAAGCACAAATGGAATTACATCATTGGCTGATCATCCGGCGCAGAATATGTTCACCGTGGAACTGAACCCTGTCTCTGATTCTGGAACATATTGGTGCGCTGCAGAAATTGGAAGTAAATGGGACCCAGATGACCGTAATTATTTGTACCTGACGGTTAGTCAAgATCCTGATCTGTCTGTGATGGAGAGCAGAGTAAAAGGTAATGAAGGTGGAAGCGTCACAGTCCAGTGTTTCTACAGCACTGCGTATTGGAATAAACAGAAGCAGTGGTGCAGATTCAAAGATGAGTGGTGCAACACAGTGAGGAAGACTTCCACAGCCCAGACTTCAGCAGTGCAAATCACTGATAATGGGAGCTCCTTCAGAGTGCAGATGAGTAATCTGAAGGAGAGTGATGCTGGCTGGTACTGGTGCAGTGCAGGAGATCTTCAGGTTCCTGTTCATATCAGTGTTGGTGCTGAAGCTCCAGGTCTGCCTGATAACCAAAAGGAAGATAAAGTATCAAATTTTGAAGACACTATACTGGCTTTTTGCATCATCTCTGGGCTCTTGTTGGTGCTCATGGTGGTTGGTTTGGTCATCTGGAAActtaaacagaaacaaaCTGGACAGTTAGTCACAAACAAAGGATATGACCACAGTCTGATAAACACTGATGTGGATTATGGTGCTTTCGTTTTCAGACAGCCGAAGAGCAATCCAAACCAGAGTCCCAAAGCACGTGAGAATGCGGTGACATATAGCACTGTGGCAGATGAACAATGCAAGGCCTCATCAGCTTCTGAGCCGGAAGTCACCTACAGCACACTCAAAATCTCTCACAATCCAACAGTCTCTCCCGTTCCCCTTAATGATAAGGTCATCTACAGCTCAGTAAAACATCACTAATGAGAGGCTACTGAAAAAACACCTGCAGTGGAAAGTCTTTGCAAGCAGTGGTGTactacacacgtttttttttgtgttcctCCATCCAGAATCTGGAATCCTTTACTGTGAAATAACATGAAGGCAGATGGATTTGTcttttctgttaatttttttttttttttttgcccaccataaacttttctttttgtgtcAGAAAGAGCACGTCTCTGTGGAGGAAGTTATtgttttgtctgtctttttttttttttttttttttttttttttttttttctttcagtagaCAGCAGAACATTATGACAAACTGAAtttacagaagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtggttgattttttttatttttttttttaacaatgattTCAGGAATGTATCTACTGCCAAGGTATATCCAGTAACTAAACATTCATTTCTTaacatagtatttt

Function

GO:

id name namespace
GO:0030097 hemopoiesis biological_process
GO:0002520 immune system development biological_process
GO:0002521 leukocyte differentiation biological_process
GO:0048534 hematopoietic or lymphoid organ development biological_process
GO:0002376 immune system process biological_process

KEGG:

id description
ko04662 B cell receptor signaling pathway

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034314718.1 False 1607 mRNA 0.41 11 16876673 16882758
XM_034314719.1 True 1655 mRNA 0.41 12 16873882 16882758

Neighbor

gene id symbol gene type direction distance location
LOC117595734 LOC108261605,LOC108280611 coding upstream 4936 16860823 ~ 16868946 (+)
LOC117599975 LOC108280611,LOC108261605 coding upstream 28237 16830102 ~ 16845645 (+)
LOC117599976 LOC108280611,LOC108280616,LOC108261605 coding upstream 49274 16820735 ~ 16824608 (+)
LOC117599974 LOC108261605 coding upstream 68619 16798786 ~ 16805263 (+)
LOC117599971 LOC108280611 coding upstream 118382 16750183 ~ 16755500 (+)
them6 LOC108280811,LOC107757799,LOC108410858,LOC107600265,LOC107655852,LOC107599286,LOC107663514 coding downstream 48550 16931308 ~ 16937488 (+)
si:ch73-52e5.2 LOC108280810 coding downstream 53047 16935805 ~ 16938674 (+)
ftr67 LOC108280685 coding downstream 59084 16941842 ~ 16947346 (+)
LOC117599965 LOC108280683 coding downstream 70219 16952977 ~ 16956560 (+)
ghrhra LOC108280336,LOC108433063 coding downstream 93165 16975923 ~ 16991112 (+)
G321591 NA non-coding upstream 14304 16792714 ~ 16859578 (+)
G321582 NA non-coding upstream 81785 16750160 ~ 16792097 (+)
G321585 NA non-coding upstream 84275 16789186 ~ 16789607 (+)
G321589 NA non-coding upstream 101433 16759842 ~ 16772449 (+)
G321584 NA non-coding upstream 118652 16745776 ~ 16755230 (+)
G321602 NA non-coding downstream 10055 16892813 ~ 16893024 (+)
G321704 LOC108410862 non-coding downstream 75987 16958745 ~ 16960734 (+)
LOC117599934 NA non-coding downstream 642813 17525571 ~ 17537160 (+)
G322127 NA non-coding downstream 748456 17631214 ~ 17631512 (+)
G322146 NA non-coding downstream 839180 17721938 ~ 17786701 (+)
LOC117599970 LOC108280611,LOC108261562,LOC108261692,LOC108261605 other upstream 14200 16838768 ~ 16859682 (+)
LOC117595733 LOC108280611,LOC108261562,LOC108280614,LOC108280616,LOC108261605,LOC108261692 other upstream 80184 16791402 ~ 16793698 (+)
LOC117599973 LOC108280611,LOC108261605,LOC108261562,LOC108261692,LOC108280616 other upstream 84914 16756631 ~ 16788968 (+)
LOC117599972 LOC108280611,LOC108280616,LOC108261562,LOC108261605,LOC108280614,LOC108280615,LOC108261692 other upstream 125542 16742805 ~ 16748340 (+)
G321257 LOC108280695 other upstream 741518 16131335 ~ 16132364 (+)
fuz fuz other downstream 596076 17478834 ~ 17483677 (+)
egfra egfr,LOC107747514,LOC107691124 other downstream 687891 17570649 ~ 17636609 (+)
npc1 npc1 other downstream 706314 17589072 ~ 17666213 (+)
si:ch211-162e15.3 LOC108280563 other downstream 1343163 18225921 ~ 18227233 (+)
pex5lb pex5lb,LOC108280742,LOC108440867,LOC107653517,LOC107564246,LOC107660316 other downstream 1511265 18394023 ~ 18430022 (+)

Expression


Co-expression Network