LOC117599974 (LOC108261605)


Basic Information

Item Value
gene id LOC117599974
gene name LOC108261605
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 16798786 ~ 16805263 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034314732.1
CGATACCGCTCCTTCACACACTTGGGGTGGAGCACCTGTCACTAAAGGAGCTGCCCAGTGCCCCCAGAGTCTCATGCATGGGGTGGGAGAAAAGCTCTACTGTGTACCATGTGTCTGCATGGCAAGGTATGGAATGATAGTTgttcctgttatagcagctagaaaaaCTTGTTCCTTCATcatcctctcttcttcttctctctgttgaagttaataagacaaaaaagtcacaaagtTAAGGCAGGCTGTGGTTTTAGATGACATCGTAATGTTAGCAGGAAGAGGAACTGCTTGAGCTGCTACAGACACAGTATCAAATTCACACAGAAGCAGGACTCAAGAAAACCTCACAATCTTTTCAACATCAGAACAAGTTTAACATGagctgctttttcatttttattctcgtCATTTCCAGTGCTGTCTGTCAGGCATCGAGGGAGTTTAGTATTAAAACTGGAGCATCTGTCACTATCCCATGTCATTATGACAGGACGTATATACAATATAAGAAATACTGGTGCCATGGAGGAACATTCGATTTCTGCAAAATTCAGGCGTATGCCAATAATACAAAGGGAAAAGTGACAGTGACTGATTACCCAGCTGAGAGTCTCTTTACTGTGACAATGAATAATCTCCAGACAGGAAATACTGGATGGTACTGGTGTGTTGTAGAGATAAGTGGACCAGACGTTAAAGAATACCTTTATATCACAGTGAAATCAGATCCTGATCTGTCTGTGAGGAACAGCAGAGTGAGAGGTGAGGAAGGAGGCAGTGTCACAGTCCAGTGTTTCTACAGCGCTGCGTATCAGAATACACAGAAGCAGTGGTGCAGATTGAAAGATGGACGCTGCAACTCAGTGGGGAGGACTGCCACatcccagaattcagcagtgcacATCAGTGATGATGGGAGAAGTTCCTTCAGTGTGCAGATGAGTGGACTGAAGAAGAGTGATGCTGGCTGGTACTGGTGCAGTGCAGGAGATCTGCAGGTTCCTGTTCACATCAGTGTCCATGATCCACCTCCAGttGTGACTACAACAGTGACTACAGCAGTGACTACAGCAGTGACTAGAACCACTCACCATGTCAGTACTTACACATCTGTCTCGAAGCACAATTCAGCAGCATCTGTGACTGCAGTTTCTAGCAGTGATGAAACCATATCTGTCTCGAAGCACAATTCAGCAGCATCTGTGACTGCAGTTTCTAGCAGTGATGAAACCATGTGagtgcaaacacacatttattctttcttgtaGAACATGTTGAACACTTTAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034314732.1 True 1290 mRNA 0.44 8 16798786 16805263

Neighbor

gene id symbol gene type direction distance location
LOC117599971 LOC108280611 coding upstream 43286 16750183 ~ 16755500 (+)
LOC113533485 LOC108280611,LOC108261562,LOC108280616,LOC108261605 coding upstream 58183 16718816 ~ 16740603 (+)
LOC113533288 dad1,LOC103040403,LOC107687594,LOC107726313 coding upstream 81579 16714399 ~ 16717207 (+)
tgm1l1 LOC108280800 coding upstream 92463 16683656 ~ 16706323 (+)
LOC113533121 kcnj10,LOC108280182 coding upstream 169314 16620683 ~ 16629472 (+)
LOC117599976 LOC108280611,LOC108280616,LOC108261605 coding downstream 15472 16820735 ~ 16824608 (+)
LOC117599975 LOC108280611,LOC108261605 coding downstream 24839 16830102 ~ 16845645 (+)
LOC117595734 LOC108261605,LOC108280611 coding downstream 55560 16860823 ~ 16868946 (+)
LOC113546333 NA coding downstream 68619 16873882 ~ 16882758 (+)
them6 LOC108280811,LOC107757799,LOC108410858,LOC107600265,LOC107655852,LOC107599286,LOC107663514 coding downstream 126045 16931308 ~ 16937488 (+)
G321582 NA non-coding upstream 6689 16750160 ~ 16792097 (+)
G321585 NA non-coding upstream 9179 16789186 ~ 16789607 (+)
G321589 NA non-coding upstream 26337 16759842 ~ 16772449 (+)
G321584 NA non-coding upstream 43556 16745776 ~ 16755230 (+)
G321563 NA non-coding upstream 94970 16666430 ~ 16703816 (+)
G321602 NA non-coding downstream 87550 16892813 ~ 16893024 (+)
G321704 LOC108410862 non-coding downstream 153482 16958745 ~ 16960734 (+)
LOC117599934 NA non-coding downstream 720308 17525571 ~ 17537160 (+)
G322127 NA non-coding downstream 825951 17631214 ~ 17631512 (+)
G322146 NA non-coding downstream 916675 17721938 ~ 17786701 (+)
LOC117595733 LOC108280611,LOC108261562,LOC108280614,LOC108280616,LOC108261605,LOC108261692 other upstream 5088 16791402 ~ 16793698 (+)
LOC117599973 LOC108280611,LOC108261605,LOC108261562,LOC108261692,LOC108280616 other upstream 9818 16756631 ~ 16788968 (+)
LOC117599972 LOC108280611,LOC108280616,LOC108261562,LOC108261605,LOC108280614,LOC108280615,LOC108261692 other upstream 50446 16742805 ~ 16748340 (+)
G321257 LOC108280695 other upstream 666422 16131335 ~ 16132364 (+)
si:ch211-178n15.1 LOC108280694 other upstream 678753 16112035 ~ 16120033 (+)
LOC117599970 LOC108280611,LOC108261562,LOC108261692,LOC108261605 other downstream 33505 16838768 ~ 16859682 (+)
fuz fuz other downstream 673571 17478834 ~ 17483677 (+)
egfra egfr,LOC107747514,LOC107691124 other downstream 765386 17570649 ~ 17636609 (+)
npc1 npc1 other downstream 783809 17589072 ~ 17666213 (+)
si:ch211-162e15.3 LOC108280563 other downstream 1420658 18225921 ~ 18227233 (+)

Expression


Co-expression Network