LOC117599977


Basic Information

Item Value
gene id LOC117599977
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 20370971 ~ 20374671 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034314775.1
TCTATGTTAAACCAACCTGCTTCTCGTTCCCAAAATTCAAATTACCAATTTACTGCAGAAGGTCTGCCTATCTGTCTCCGCTGCTGTAAGCCTGGACATGTCTCGCGCCAGTGTCGCCAGGGAGCCAGGCTGTGGACATCCGGTTTGTCTAACCTTCAACCTGAGGAAAACCCTACTCCAACCATTGCAGGATCTTCAGGTATGCATAGTCGTGAGTATTGTAATGATTCAAGTAACACTAGCCCCCTTAAGCAGACCCTACCTGTGTCAAAGGCTTCTAAACCACTGATAGGTAGTTGCCCAGTAGTGGAGGTAGAGATGGGTGGAGTTACAGTGAAGTGCCTGTTGGATACTGGTTCTATGGTAACCACAATCACTGAGTCATTTTTTAGAGAGTCTTTCCAACATTGGGGTGCTCCTAGGCTTAGGTCATGTGGATGGTTGGCTTTGAAAGCAGCTAATGGCTTAGACATTCCTTATGTTGGGTATTTGGAGTTGGACATCAGAGTACTGGGTAGAACTATTCCAGGTCGTGGGGTTTTGGTGGTGAAAGATGCTCTTACAGCATCACAACCCATCCCTGGGTTGTTGGGAATGAATGTTATCAATGAGTGTTATAGGGAGTTGTTTGTACATCAGGGAGAGTCTTTATTTGCCTCTTTGTCGGCCATCCAAGCAGAACCATGTTGGGAGCCAGCTCTTCGCCATTGTCACCGGCAAGAAGTTTGTCCACTAACTCCTGAGGGTCAGGTTCGCGTCTTAGAAAAGACAGGGGAGTTTATACCAGCTGGGTCACTTAAATTTGTTAAGGTTACTGGCCCCAGAGTCCCCTACACATCATCAACCACTATGTTGTTGGAGCCTGGGGGCTCTGACCTTGCCCCTGGTCTGTTGTTGTCCCCAGCCTTAGTCAGTGTTTCCAATGGTGTGACTTATGTCCCTGTAGTCAATGTGGGGGCCACAGGAGCTACTGTCCATCCAAAACAAGTGTTGGGGATGTTACACTCAGTCACAGGCATAGATGGGCAACAGCTTAGTTTTGAGGGGGAGAGTGAAGAGGTTACTCGTGTTTGCATGCATTCTATAAGGGGGCCACCAGCCTCAGTCTCAGAAACCATCACAGCTCTCCAATGGCCAGGGCTTTCACCGGCAGAAGAGAAACAGGTGAGAGAGCTTTTAGGGAAGTATAGCAATGTGTTTGCTAGGCATGATGGGGATTTAGGGTGTACTGATGAAATCGTACATGAAATACCTCTCTTAGATGATGCTCCAGTTCGACAGAGATATAGACGAATACCACCCACTCAGTGGCAGGCTGTAAAGGATCATATTAAGCAGCTCCTTGAAAGTAAAGTTATCAGGGAGAGTAGCAGCCCCTACGCATCACCTATTGTCCTGGTGCAAAACAAGTCTGGAGAGCTAAGGATGTGTGTTGATTATCGGCAACTTAATGCGAAGATGCAGAAGGATGCCTATCCATTGCTTCGTATTGAGGAATTTTTGGATGCCCTGGCTGGTGCCCAGTGGTTTTCAACACTGGATCTGGCCAGTGGCTATAATCAAGTAGCTGTTGCTGAGAAAGATAAGGCAAAGACTGCATTTTGTACACCTTTTGGTCTTTTTGAGTTTGAGCGAATGCCTTTTGGTCTATGTAATGCTCCAGGGACTTTTCAGAGGCTCATGGAGCGAATATTTGGAGATCAGAGCTTTCATTCAGTTCTTTTATATCTTGATGACGTTATAATCTTTTCCTCCTCAGTGGAACAGCACTTACAGAGACTGGAGATGGTCCTGAGCCAACTCGACCAGAAGGGGTTGAAGGCCAAATTGACCAAGTGCCGTTTTTTTCAGACCGAGGTTCAGTACCTGGGACATCGGGTTTCCAGAGATGGTGTGGCCACGGATCCTGATAAGATAGCAGCTGTGAGTAACTGGAAGCAGCCATGTGATGTGACAGAAGTACGCTCGTTTCTTGGATTTTGCAGCTACTACCGCCGCTTTGTTAAGGGCTTTGCACAGTTGGCTGCTCCCCTCCATCAACTGGTGGCAAAGGTCATCCAGACTGCCAAGCGGAATCGGAGAAGGCCAGCAGAAATCCTGCCCAGTATGTGGACGGAGGAGTGTGAGAAAAGCTTCAGTGAGTTGAAGAGGATGCTCACCAGTGCTCCTGTCTTGGCTTTTGCTGACTTCACCAAGCCCTTTGTTCTAGAGGTGGATGCAAGCCATCAAGGGCTAGGCGCGGTTTTGTCTCAGGAGCAACAGGGCAAGTTAAGACCGGTGGCATATGCCAGTCGCTCATTGCGGGGATCGGAGCGTAACATGGAGAACTATAGCTCCATGAAGCTGGAGTTTCTTGCTTTGAAGTGGGCAATATCCGAGAAGTTCAGGGAGTATTTGCTTGGCATGATCCAGCCAAGATGTCGGACCCGGGGACTCACCAGTCCTGGAGAGGCTGAGGGAGCATTTCTACACCAAATTGGAGTTCTTCCAAGTCGATCTACCTCCGAATTGATAACCTTGCAGGAGAAAGATCCTGTTCTTAGGGATTTTCTTCTGTATTGGAAACAAGGAAAGTTACCTAGCAAGGAACAAAAGGAAAAGCTCACAGCAGATGCTCAGCACCTGTTTCGGCAGTGGGACCGGATTTTGGAGAGTGACAGCCTGCTGTACAGGAAGTTGACAGCCCCCCATGGCGAGCCCTACCTTCAGCTCCTTCTGCCCATGTGTCTTCGTCAGGAGTCAACCCCTAGTGCAGTGCCACCAACACCGGCAGGGGATTTATCTGGTGGCGATCCCAACCCATCATGTGATGAGGAAGAGGCGCCCCAACTAAGACGGACCCAGCGGACAACTGCTGGACAGCACACAAACCCCTATAATTTGCCGAGATCTACAGTGACGAGTGCCAGTTTGGGTGTGGTGGGGGCTGCTGTTCTTTCTGAATCTGGGGTTGGTAGTGCCTAGGTCATGATGACAGTTGGTCGTCGGGGCGACAACTCTTTTTGGAGGGGGTGAATGTGGGGATCTGTGTTTTCTTGTTGGTGGTTACCTGCACTGATAATCAGTGTGGGGATCATGTGATCTGCATTGTGTGGCTGCTTGTCTTGGGTCACATGAggcatgtcacatgacacatTAGGAGATTATAAAGTTTGGCTTGTGGAGTTCACACTCTCTTGCTGCTGCCATTTGCCACTGCAACTAGACTCCCGTCATACAGGGTGACTGCTAGAACAATGTGTTCCACACTTTATGAAGGACACAAGTGACTGCGTGGCATTTGAAGGACTTGTGACCTCCTACTGAGTTGCTGGGCTGCAGACACTCTGCACTGGAGTGCCCCATTTTATCTTCCTGGGTTATTGTGCTGCGGGGAGTATTGAACACTCTTGCAAAGGACCAGGCCAGCCACTGTTTTATTGTCAGTgtacaagtcttttttttttagtttgtttgttggttgttttgtttgcctttggctttgtccttttttttttttttttgtccttggtCTAGTGTAACCCTGCCTTGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034314775.1 True 3532 mRNA 0.48 2 20370971 20374671

Neighbor

gene id symbol gene type direction distance location
LOC113546384 LOC108280310 coding downstream 20317 20338178 ~ 20350654 (-)
eif4g1a LOC108280304,LOC108280982,LOC108442892 coding downstream 35256 20302600 ~ 20335715 (-)
LOC117595748 NA coding downstream 55759 20315137 ~ 20315212 (-)
LOC113546475 NA coding downstream 61398 20309497 ~ 20309573 (-)
fam131a fam131a,LOC108280319,LOC106961227,LOC107570263 coding downstream 70826 20284856 ~ 20300145 (-)
ubxn7 ubxn7,LOC107677685,LOC107710610,LOC107563300 coding upstream 47501 20422172 ~ 20433542 (-)
ppp1r7 ppp1r7,LOC107700558,LOC107710611,LOC107677693 coding upstream 61818 20436489 ~ 20444429 (-)
gk5 gk5,LOC108442893,LOC108442898 coding upstream 75777 20450448 ~ 20461880 (-)
LOC113524963 LOC108280315,LOC108413460,LOC102229933,LOC103146349,LOC107085927,LOC103396494,LOC103353958,LOC103479750 coding upstream 357930 20732601 ~ 20757942 (-)
amy2a LOC107719254,LOC107586833,LOC107664453 coding upstream 399361 20774032 ~ 20780151 (-)
G323709 NA non-coding downstream 185839 20129253 ~ 20185132 (-)
G323706 NA non-coding downstream 190410 20121770 ~ 20180561 (-)
LOC117599996 NA non-coding downstream 553906 19815214 ~ 19817065 (-)
LOC117599987 NA non-coding downstream 556760 19810468 ~ 19814211 (-)
G323327 NA non-coding downstream 768635 19602109 ~ 19602336 (-)
G323773 NA non-coding upstream 14570 20389241 ~ 20436040 (-)
G323781 NA non-coding upstream 42939 20417610 ~ 20442372 (-)
G323782 NA non-coding upstream 53435 20428106 ~ 20428391 (-)
G323775 NA non-coding upstream 70313 20444984 ~ 20446212 (-)
G323787 NA non-coding upstream 95459 20470130 ~ 20471017 (-)
G323726 NA other downstream 175299 20195294 ~ 20195672 (-)
kdm4ab kdm4a,kdm4ab,LOC108280529,LOC107564389,LOC107684932,LOC107700543,LOC107551714,LOC107743373 other downstream 863774 19476112 ~ 19507197 (-)
G323011 rpl5,rpl5a,LOC102781853,LOC108436062,LOC101160347,LOC103149531,LOC106904255,LOC105920466,LOC106958298 other downstream 1293054 19075000 ~ 19077917 (-)
tceanc2 tceanc2 other downstream 1364592 19003239 ~ 19006379 (-)
mrpl37 mrpl37 other downstream 1376335 18985173 ~ 18994636 (-)
LOC113546371 NA other upstream 9530 20384201 ~ 20411806 (-)
LOC113546455 atr,LOC104958464,LOC107677746,LOC107700496,LOC107576458 other upstream 87344 20462015 ~ 20469569 (-)
sh3glb1b sh3glb1,LOC108280317,LOC107700566,LOC107677816,LOC107732941,LOC108414852,LOC107553268,LOC102780267,LOC107382675,LOC103377018 other upstream 291620 20666291 ~ 20714017 (-)
G323902 NA other upstream 453355 20828026 ~ 20830104 (-)
LOC113524960 LOC108280415 other upstream 571465 20946136 ~ 20976372 (-)

Expression


Co-expression Network