rpap2 (rpap2)


Basic Information

Item Value
gene id rpap2
gene name rpap2
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 19027881 ~ 19042630 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034314834.1
TCGCGCTTGCTGTAGAAATGTGACGAAAGCGGAAGTAAGTGACGGATTTTGTTTTGATGGAAGAAAGCATGGAAGCCGGCGAGAAGAAACGAGCTCGCTCATCTAAAACTAAAAAAGGTGGAAGAGCAGCTCAGGTGAGGTCAGCTGAAGAGGAGGCCAGAAGATTCCTTCTTCTCAGGAAGGAGGTGTTGAAGGAGGCCCTGAGGGAGAAGCTGGAATTGGAGCGGAGAGCTCTTCAGGTGGTGGAAAGGCTCCTGGACGACGGCGTGACGGAGGATTTCCTGACAGACTGCGCTCGACTGATCACACCAGCTAACTACAGCGATGCAGTGGAGGAACGCTCCATCGTCAGAATGTGTGGATATCCTGTCTGCTCCAACAAACTCGCTAACGTTCCAACTCAACAGTATAAAATTTCCACCAAGACCAATAAGGTGTATGATATCACTGAGCGCAAGTGCTTCTGTAGTAACTTCTGCTACAAAGCCTCGAAATATCTCGAAGTCCAGATATCCAAATCACCGCTGTGGCTGAGAAAGGAGGAGAGACCTCCTGAGGTGAAGCTGTTGAAGAAGGGAGATGGAGGCACTTCAGGTCTGGAGGTGAAGCTATCAGACAGACCTGTGAGTAAATCGGACGTTGAGAATCCGATCCCAGAATGCACCGGGTCGCACGGAGGCTCCAGCGAGGGCGAGTGTAGCGATGAGGAGGAGGGCTTCGTGTCCAGCGTGGTGGCCAGACAGCAGCAGCCGAGGCGTGTTCGCTGGGGGGATCTGCCCAGGCGGGACGGAGAAAACCAAACGCACGACGGTGACGCCGAAGTGGCAGGTGTGAGgcgtgagagagagaagcgCTGTGATGACGCTAAGGTCTCTCAACCAGTCAGTTCCTCAGTGTCAGTGGATGAAACCAGTGAGCTTCTACAGCAGGTTGCTCTCTCCGACTCTCCTGCTTCGGCTGACAACTCTCTCGAAACGAGCCTCGACATCTCCCAAGTGGGGATGAGTAAAAAAACTGCTGCTGGACTCCGAAAGCTGCTAAAGAGTCACGGGAAAGCGAGAGCCGAAGCTCCGGCGGTCACGCTCAGCCTGCTGgaaggtctcacacacacattgatggAGTGGAGAACCGAGGAGACCATGAGGTTCCTCTACGGACCAGATTACACCTCACACACTGAGGCTGAGCTGCAgagcgaggaggaggaggaggaagagctgGATGAAGATGACCTGGAGGATGTAGAGAAGGTGAAGCGTTCAGGAGAAGGTTCAGGAGGAGGTTCAGGAGGAGGTTCAGGAGAAAGTTCAGGAGGAGGTTCAGGAGGAGGTTCAGGAGGAGGTTCAGGAGGAGGTTCAGGAGGAGGAGCTCAGGCTCGACCCTCTGCAGCAGCACCTGATTATGACACTCTGACGAGAGAGACGCAGATGCTGGCGCTCCAAGTGCACGAGTTTtacagaggagtgtgtgtccTGCCTGAGGAGGTGCAAACAGAAGCTGGagaggagaaaacacacaccgAGGACCGAGAGAACGCCCCGCCGTTGCCGCTGGTCGACTCTCGTTCTCAGCGAGCGATCCAGAGACGCATTGCTGTGGAGAAGCTCTGCAGAAGTCTAAGAGACGTCGTCGGGCCTCTGGGTCTAACCATGAGCGAGATCATCGATGATATTAACGGCATAGTCCGGACCTTCAGATTTACTAACGTTAACATCATCCACAAGCCTCCTGAATGGACCTTGATTGCCATCGTTTTGCTTTCAGCGTTAACTGAAGTGTCTCCGTCGCTGAGGGAGTCGATGACGAGGACGTGTTCAGTCGAGTACATCAGCTCTCTCATGAAGGAGCTCAGACTGAAGGACGAGGATCTGCAGAACCTCGTGAAGCTCTTCAAGCCTGTCAGAAGAGCGCACGCTACACACTCGGCTACAGAGTAGAGCCGAGTAACAAGGcagtaaaactgaaaataatacaaataaatgcagTTGTGTGAACCAGAAAACAAGGCTacttgaaatgttttcttttttttaatctttctgatTGAGATTCCTGAGCAGCTCTTAATTATAATACTGTAATCCTAAATCATGTGTAAACCTGGGTATAGGTTTGACATTTTGCTCAATTTTGATGTTTGTCGTCCTGAAGAATGCGgtgcaaattattaaaatgtttggcTTATA
>XM_034314835.1
GCGCTTGCTGTAGAAATGTGACGAAAGCGGAAGTAAGTGACGGATTTTGTTTTGATGGAAGAAAGCATGGAAGCCGGCGAGAAGAAACGAGCTCGCTCATCTAAAACTAAAAAAGGTGGAAGAGCAGCTCAGGTGAGGTCAGCTGAAGAGGAGGCCAGAAGGAAGGAGGTGTTGAAGGAGGCCCTGAGGGAGAAGCTGGAATTGGAGCGGAGAGCTCTTCAGGTGGTGGAAAGGCTCCTGGACGACGGCGTGACGGAGGATTTCCTGACAGACTGCGCTCGACTGATCACACCAGCTAACTACAGCGATGCAGTGGAGGAACGCTCCATCGTCAGAATGTGTGGATATCCTGTCTGCTCCAACAAACTCGCTAACGTTCCAACTCAACAGTATAAAATTTCCACCAAGACCAATAAGGTGTATGATATCACTGAGCGCAAGTGCTTCTGTAGTAACTTCTGCTACAAAGCCTCGAAATATCTCGAAGTCCAGATATCCAAATCACCGCTGTGGCTGAGAAAGGAGGAGAGACCTCCTGAGGTGAAGCTGTTGAAGAAGGGAGATGGAGGCACTTCAGGTCTGGAGGTGAAGCTATCAGACAGACCTGTGAGTAAATCGGACGTTGAGAATCCGATCCCAGAATGCACCGGGTCGCACGGAGGCTCCAGCGAGGGCGAGTGTAGCGATGAGGAGGAGGGCTTCGTGTCCAGCGTGGTGGCCAGACAGCAGCAGCCGAGGCGTGTTCGCTGGGGGGATCTGCCCAGGCGGGACGGAGAAAACCAAACGCACGACGGTGACGCCGAAGTGGCAGGTGTGAGgcgtgagagagagaagcgCTGTGATGACGCTAAGGTCTCTCAACCAGTCAGTTCCTCAGTGTCAGTGGATGAAACCAGTGAGCTTCTACAGCAGGTTGCTCTCTCCGACTCTCCTGCTTCGGCTGACAACTCTCTCGAAACGAGCCTCGACATCTCCCAAGTGGGGATGAGTAAAAAAACTGCTGCTGGACTCCGAAAGCTGCTAAAGAGTCACGGGAAAGCGAGAGCCGAAGCTCCGGCGGTCACGCTCAGCCTGCTGgaaggtctcacacacacattgatggAGTGGAGAACCGAGGAGACCATGAGGTTCCTCTACGGACCAGATTACACCTCACACACTGAGGCTGAGCTGCAgagcgaggaggaggaggaggaagagctgGATGAAGATGACCTGGAGGATGTAGAGAAGGTGAAGCGTTCAGGAGAAGGTTCAGGAGGAGGTTCAGGAGGAGGTTCAGGAGAAAGTTCAGGAGGAGGTTCAGGAGGAGGTTCAGGAGGAGGTTCAGGAGGAGGTTCAGGAGGAGGAGCTCAGGCTCGACCCTCTGCAGCAGCACCTGATTATGACACTCTGACGAGAGAGACGCAGATGCTGGCGCTCCAAGTGCACGAGTTTtacagaggagtgtgtgtccTGCCTGAGGAGGTGCAAACAGAAGCTGGagaggagaaaacacacaccgAGGACCGAGAGAACGCCCCGCCGTTGCCGCTGGTCGACTCTCGTTCTCAGCGAGCGATCCAGAGACGCATTGCTGTGGAGAAGCTCTGCAGAAGTCTAAGAGACGTCGTCGGGCCTCTGGGTCTAACCATGAGCGAGATCATCGATGATATTAACGGCATAGTCCGGACCTTCAGATTTACTAACGTTAACATCATCCACAAGCCTCCTGAATGGACCTTGATTGCCATCGTTTTGCTTTCAGCGTTAACTGAAGTGTCTCCGTCGCTGAGGGAGTCGATGACGAGGACGTGTTCAGTCGAGTACATCAGCTCTCTCATGAAGGAGCTCAGACTGAAGGACGAGGATCTGCAGAACCTCGTGAAGCTCTTCAAGCCTGTCAGAAGAGCGCACGCTACACACTCGGCTACAGAGTAGAGCCGAGTAACAAGGcagtaaaactgaaaataatacaaataaatgcagTTGTGTGAACCAGAAAACAAGGCTacttgaaatgttttcttttttttaatctttctgatTGAGATTCCTGAGCAGCTCTTAATTATAATACTGTAATCCTAAATCATGTGTAAACCTGGGTATAGGTTTGACATTTTGCTCAATTTTGATGTTTGTCGTCCTGAAGAATGCGgtgcaaattattaaaatgtttggcTTATA
>XM_034314836.1
TCGCGCTTGCTGTAGAAATGTGACGAAAGCGGAAGTAAGTGACGGATTTTGTTTTGATGGAAGAAAGCATGGAAGCCGGCGAGAAGAAACGAGCTCGCTCATCTAAAACTAAAAAAGGTGGAAGAGCAGCTCAGGTGAGGTCAGCTGAAGAGGAGGCCAGAAGATTCCTTCTTCTCAGGAAGGAGGTGTTGAAGGAGGCCCTGAGGGAGAAGCTGGAATTGGAGCGGAGAGCTCTTCAGGTGGTGGAAAGGCTCCTGGACGACGGCGTGACGGAGGATTTCCTGACAGACTGCGCTCGACTGATCACACCAGCTAACTACAGCGATGCAGTGGAGGAACGCTCCATCGTCAGAATGTGTGGATATCCTGTCTGCTCCAACAAACTCGCTAACGTTCCAACTCAACAGTATAAAATTTCCACCAAGACCAATAAGGTGTATGATATCACTGAGCGCAAGTGCTTCTGTAGTAACTTCTGCTACAAAGCCTCGAAATATCTCGAAGTCCAGATATCCAAATCACCGCTGTGGCTGAGAAAGGAGGAGAGACCTCCTGAGGTGAAGCTGTTGAAGAAGGGAGATGGAGGCACTTCAGGTCTGGAGGTGAAGCTATCAGACAGACCTGTGAGTAAATCGGACGTTGAGAATCCGATCCCAGAATGCACCGGGTCGCACGGAGGCTCCAGCGAGGGCGAGTGTAGCGATGAGGAGGAGGGCTTCGTGTCCAGCGTGGTGGCCAGACAGCAGCAGCCGAGGCGTGTTCGCTGGGGGGATCTGCCCAGGCGGGACGGAGAAAACCAAACGCACGACGGTGACGCCGAAGTGGCAGGTGTGAGgcgtgagagagagaagcgCTGTGATGACGCTAAGGTCTCTCAACCAGTCAGTTCCTCAGTGTCAGTGGATGAAACCAGTGAGCTTCTACAGCAGGTTGCTCTCTCCGACTCTCCTGCTTCGGCTGACAACTCTCTCGAAACGAGCCTCGACATCTCCCAAGTGGGGATGAGTAAAAAAACTGCTGCTGGACTCCGAAAGCTGCTAAAGAGTCACGGGAAAGCGAGAGCCGAAGCTCCGGCGGTCACGCTCAGCCTGCTGgaaggtctcacacacacattgatggAGTGGAGAACCGAGGAGACCATGAGGTTCCTCTACGGACCAGATTACACCTCACACACTGAGGCTGAGCTGCAgagcgaggaggaggaggaggaagagctgGATGAAGATGACCTGGAGGATGTAGAGAAGGTGAAGCGTTCAGGAGAAGGTTCAGGAGGAGGTTCAGGAGGAGGTTCAGGAGGAGGTTCAGGAGGAGGAGCTCAGGCTCGACCCTCTGCAGCAGCACCTGATTATGACACTCTGACGAGAGAGACGCAGATGCTGGCGCTCCAAGTGCACGAGTTTtacagaggagtgtgtgtccTGCCTGAGGAGGTGCAAACAGAAGCTGGagaggagaaaacacacaccgAGGACCGAGAGAACGCCCCGCCGTTGCCGCTGGTCGACTCTCGTTCTCAGCGAGCGATCCAGAGACGCATTGCTGTGGAGAAGCTCTGCAGAAGTCTAAGAGACGTCGTCGGGCCTCTGGGTCTAACCATGAGCGAGATCATCGATGATATTAACGGCATAGTCCGGACCTTCAGATTTACTAACGTTAACATCATCCACAAGCCTCCTGAATGGACCTTGATTGCCATCGTTTTGCTTTCAGCGTTAACTGAAGTGTCTCCGTCGCTGAGGGAGTCGATGACGAGGACGTGTTCAGTCGAGTACATCAGCTCTCTCATGAAGGAGCTCAGACTGAAGGACGAGGATCTGCAGAACCTCGTGAAGCTCTTCAAGCCTGTCAGAAGAGCGCACGCTACACACTCGGCTACAGAGTAGAGCCGAGTAACAAGGcagtaaaactgaaaataatacaaataaatgcagTTGTGTGAACCAGAAAACAAGGCTacttgaaatgttttcttttttttaatctttctgatTGAGATTCCTGAGCAGCTCTTAATTATAATACTGTAATCCTAAATCATGTGTAAACCTGGGTATAGGTTTGACATTTTGCTCAATTTTGATGTTTGTCGTCCTGAAGAATGCGgtgcaaattattaaaatgtttggcTTATA

Function

symbol description
rpap2 Predicted to enable RNA polymerase II CTD heptapeptide repeat phosphatase activity. Predicted to be involved in dephosphorylation of RNA polymerase II C-terminal domain and snRNA transcription. Predicted to be located in cytoplasm and nucleus. Predicted to be part of RNA polymerase II, holoenzyme. Orthologous to human RPAP2 (RNA polymerase II associated protein 2).

NR:

description
putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 isoform X1

GO: NA

KEGG:

id description
K20827 RPAP2; RNA polymerase II-associated protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034314834.1 True 2186 mRNA 0.52 13 19027881 19042630
XM_034314835.1 False 2169 mRNA 0.52 13 19027883 19042630
XM_034314836.1 False 2138 mRNA 0.51 14 19027881 19042630

Neighbor

gene id symbol gene type direction distance location
cdc7 cdc7,LOC102782901 coding upstream 13688 19006527 ~ 19014193 (+)
cdcp2 cdcp2 coding upstream 25674 18995557 ~ 19002207 (+)
fam151a fam151a coding upstream 91091 18931059 ~ 18936790 (+)
cryz cryz coding upstream 102308 18919067 ~ 18925573 (+)
sdr16c5a LOC108280727 coding upstream 217671 18799203 ~ 18810210 (+)
rpl5a rpl5-a,rpl5,LOC103397662,LOC103368809,LOC107659024,LOC107566486 coding downstream 31077 19073707 ~ 19077866 (+)
mtf2 mtf2,LOC107743365,LOC107568093 coding downstream 52292 19094922 ~ 19106149 (+)
ccdc18 ccdc18 coding downstream 67658 19110288 ~ 19136781 (+)
scinlb LOC108280481,LOC108436067,LOC107588891,LOC107700536,LOC107658127,LOC107568091,LOC107743367,LOC106598932 coding downstream 100978 19143608 ~ 19160143 (+)
wls wls coding downstream 121045 19163675 ~ 19187632 (+)
G322817 mrpl37 non-coding upstream 33258 18993758 ~ 18994623 (+)
G322802 NA non-coding upstream 68562 18959083 ~ 18959319 (+)
G322747 NA non-coding upstream 213064 18814614 ~ 18814817 (+)
G322746 NA non-coding upstream 215033 18812503 ~ 18812848 (+)
G322744 NA non-coding upstream 215546 18811105 ~ 18812335 (+)
G322957 NA non-coding downstream 64756 19107386 ~ 19109334 (+)
G323104 NA non-coding downstream 391600 19434230 ~ 19438075 (+)
G323168 NA non-coding downstream 470094 19512724 ~ 19523033 (+)
G323206 LOC107743377 non-coding downstream 539687 19582317 ~ 19583323 (+)
G323240 NA non-coding downstream 601193 19643823 ~ 19644570 (+)
ssbp3a ssbp3,ssbp3a other upstream 42799 18944698 ~ 18985082 (+)
slc44a5a slc44a5,slc44a5a,LOC108280730 other upstream 156521 18816009 ~ 18871360 (+)
pex5lb pex5lb,LOC108280742,LOC108440867,LOC107653517,LOC107564246,LOC107660316 other upstream 597859 18394023 ~ 18430022 (+)
si:ch211-162e15.3 LOC108280563 other upstream 800648 18225921 ~ 18227233 (+)
npc1 npc1 other upstream 1361668 17589072 ~ 17666213 (+)
gng12a gbg12,gng12a,gng12,LOC107705318,LOC107700509,LOC105895117 other downstream 162028 19204658 ~ 19220229 (+)
LOC113546339 NA other downstream 271230 19313860 ~ 19316206 (+)
clcn2a clcn2a,clcn2,LOC108280323,LOC107710554,LOC107732945 other downstream 1086623 20129253 ~ 20281067 (+)
G323534 NA other downstream 1396072 20438702 ~ 20440561 (+)
arhgef4 arhgef4,LOC107700563,LOC107710620,LOC107732940 other downstream 1594954 20637584 ~ 20663819 (+)

Expression


Co-expression Network