LOC113543357


Basic Information

Item Value
gene id LOC113543357
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 3642315 ~ 3646672 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034314852.1
TGGGAGGTTCAGAGATCAGAGACACCCAGCACTCCGATGTGACCGACTCGCAGGGGACGGAGCAGTTGATCATTTCTAATCGATCCAAGTGTGGAGAGATGCATCACCAAAACCAGCACTGTTCTCTCTCAGACAGACAGCGTATCTGCTGTCATAGTTTGACGAGACATCATGGAGGATTTGAATACGATTCAACTAGGCAGCAACAGAAGGAGGACACCAATGTCCCGGGGACGCAAGAATGTCCAACTGTGTGTTATTATGCAGGAGACAGTGAGCTCACCCATGCGTACATTCAGAACGAGACTGATTCCTGCTTGAGTGATTCTGGAAGTGATTTTGGAGAAATGTGCCACCAGCAGGATATCCACGATGTCCTGATGGATCCATGCCTCCAAACCTGTGCTGGTAGAGAACACAACCCTGAAGTGTCTCATCCTCAAACCAGTGGAAGAATGAATGAAGAGCCAGAACAGAGTCAAGACACCGTATGTCCATGCAGTGCTGTACATTCAAGATGGAGTAGCAACCAATGGCCATCTTTACCTCCTCCGTGTTGTAATGTAAGAAACGCATTGGTGGTGGGTGTCGAAGTGGATGTTCTAGAAGAGGTGGTCTACGAAGACACGGAAATTGTTCAAACACAGACCATGTTTGATGGCTGCCTGGAGGATCATATGATGGACTCCACCTCATGTTATTGTGACCAGTTGTTTTTCATGTGACTGtaacaaatgatattattattccttacattattatacattatcatatacattatattattaatattaataatagcaGGCTTATTTttgtcatctgtgtgtgtttacaatgtCTTTAGGAAAAAGTGCTATATTCAGAATAACAGTCATTTTGTCATTCAGAGTGCTAActattaagaaataataatattattatttccgGTTGCTTCGTATTTAGCAGCATTATGATAAGAGTGGCTGatattacttttaaataacTGAAGCATTGATTAATGTAAGTTAGCTTTTGGCATGTCATAaagactttaataaataaaagagtggGAAATTTATTTGGTCTGAGATGCATTTGGTAAGATATTGAATAACCAGACAACAGggaggataataataataataataataataataataataataatactgagacTATAATAGTCTacaatgataatgataatatttaactttttagGCTATTTTGATAAGAATTGCATGTGTTGtgtattaaatatactgtaccTCAGCTTCAAGGTTATTTTGTTAATTCAATTCCAAGAATTGCCAGAAAGCCACTTTTATTTCCTCTTAATCCTTCATTGCTCTGTACTTTGATTGGATTCTGcctcattttgtcattttgagtaaaagtgtctgctaaatgaataaatataaatgtatatgagATTA

Function

GO: NA

KEGG:

id description
ko04020 Calcium signaling pathway
ko04724 Glutamatergic synapse
ko04720 Long-term potentiation

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034314852.1 True 1412 mRNA 0.37 4 3642315 3646672

Neighbor

gene id symbol gene type direction distance location
trnas-aga_16 NA coding upstream 14202 3628032 ~ 3628113 (+)
trnas-aga_14 NA coding upstream 16285 3625960 ~ 3626030 (+)
trnas-aga_13 NA coding upstream 16818 3625416 ~ 3625497 (+)
atg5 atg5,LOC107697282 coding upstream 119102 3502067 ~ 3523213 (+)
sall3a sall3,LOC108435487 coding upstream 324364 3298344 ~ 3317951 (+)
nt5c3a nt5c3a,LOC107697280,LOC107720166,LOC107581689,LOC107714420 coding downstream 1075 3647747 ~ 3662687 (+)
pmvk pmvk coding downstream 166581 3813253 ~ 3816854 (+)
trnap-ugg_21 NA coding downstream 300263 3946935 ~ 3947006 (+)
tagln LOC108280395,LOC108424042,LOC103045968,LOC107567684 coding downstream 316083 3962755 ~ 3968351 (+)
LOC113543359 LOC108280252 coding downstream 528121 4174793 ~ 4183429 (+)
G313853 NA non-coding upstream 117797 3524309 ~ 3524518 (+)
G313796 NA non-coding upstream 343009 3299098 ~ 3299306 (+)
G313607 NA non-coding upstream 565945 3076049 ~ 3076370 (+)
LOC113543325 NA non-coding upstream 697108 2942487 ~ 2945207 (+)
G313494 NA non-coding upstream 852819 2789242 ~ 2789496 (+)
G313949 NA non-coding downstream 126398 3773070 ~ 3819909 (+)
G313975 NA non-coding downstream 160476 3807148 ~ 3808690 (+)
G313990 NA non-coding downstream 199185 3845857 ~ 3846095 (+)
LOC117599982 NA non-coding downstream 241355 3888027 ~ 3895685 (+)
G314222 NA non-coding downstream 349830 3996502 ~ 4000314 (+)
LOC113543208 LOC108280571,LOC108435486 other upstream 152948 3423567 ~ 3489367 (+)
trnat-agu_12 NA other upstream 752927 2889315 ~ 2889388 (+)
G313445 fbxl7,LOC108280577,LOC107689422,LOC105900492 other upstream 966467 2675281 ~ 2675848 (+)
LOC117599997 LOC108280771,LOC108435500 other upstream 979916 2655200 ~ 2662399 (+)
G313112 zswim5 other upstream 1456638 2181979 ~ 2185677 (+)
LOC113543063 stx1a,LOC105005600,LOC102795677 other downstream 945768 4592440 ~ 4762095 (+)
pou3f2b pou3f3,pou3f3a,LOC108280934,LOC105896554,LOC108266720 other downstream 1141176 4787848 ~ 4789835 (+)
LOC113543089 mbp other downstream 1254798 4901470 ~ 4958121 (+)
sptssb sptssb,LOC107567691,LOC107703014,LOC107750122 other downstream 1441167 5087839 ~ 5091273 (+)
kpna4 kpna4,LOC107703033,LOC107750083,LOC107720438,LOC107662578 other downstream 1554349 5201021 ~ 5216591 (+)

Expression


Co-expression Network