ralbp1 (ralbp1,LOC107696059,LOC107667860)


Basic Information

Item Value
gene id ralbp1
gene name ralbp1,LOC107696059,LOC107667860
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 14438363 ~ 14450439 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034314854.1
TTTTAGCAGGCGAGCTGTTTGTCGTTACCTACATTTCCCAGAATTCAAAGCGAACGCAAACTGCGCAAACTCGCGTCACAGTTGGCACGTAAACACAGCAACAGGAAGCAGCTCTGTGAAAATGACTCCTAGCAGatagtaTGGAGAGGTGACGCGTCATCAGATTGTAACTGATAGCAGGGCAGCGTGCCGTGATCAGCCAATAGGAAAGCGGCAGCACAATGACTGAGTGCTTCCTGCCACCCAATAGCAGCCCTGCAGAGCAGCGGCGAGGAGCGGAGCATCAGAGCGGCGTGCCTCGGACCCCCAGCTCAGAGGAAATCAGCCCCACTAAATTCCCAGGGCTGTACCGCACAGGCGAACCATCACCGCCACATGATGGACACCACCATGAGCCTCCCGACGCTGCCTCTGATGATGATAAGGAGCAcagcaagaagaagaacaagTTCAAGAAAAAGGAGAAACGCACTGAGGGCTACGCTGCCTTCCAGGAGGATAGCTCGGCTGACGAGGCCGAGAGCCCGTCCAAGATGAAGCGCTCCAAAGGCATCCACGTGTTCAAGAAGCCCAGCTTCTccaagaagaaggagaaggactTTAAAGTGAAGGAAAAAGGCCCCAAAGAGGAGAAGGCCAAGGACAAGAAGTCCAAGGACTTGACTGCAGCTGACGTGGTCAAGCAgtggaaggagaagaagaagaagaaaaagccaAGCACTGCAGAACCGGAGCCAGTCGCTGTGGAGACTCCAGCCACAGTCAGACCCATTTTCGGTGCGCCGTTAGCTGAAGCAGTGAGGAGGACGGCGCTGTACGATGGAATCCAGCTGCCTGCCATTTTCCGCGAGTGCATTGACTACATCGAGAGCTATGGCATGAAGTGTGAAGGCATCTACCGCGTCTCCGgaatGAAGTCGAAAGTGGATGAGCTGAAGGCGGCGTACGACCGCGAGGAGTGCCCGTGCCTGGAGGAGTACGAGCCGCACACTGTGGCCAGCCTAATGAAGCAGTACCTGCGCGAGCTGCCCGACAACCTCCTGGGCCGAGATTTGGCGCCGCGGTTTGAGGATGCATGCAGCCGCTCCAGCGAGGCAGAGAAGCTTCATGAGTTCCAGCGGCTGCTGGCTGAGGTTCCTGAGGGAAGCAGGCTGCTCTTGTCATGGCTCATCACTCATATGGACCACGTGATCGCCCGTGAGGCAGACACCAAGATGAACATCCAGAACATCTCCATTGTGCTCAATCCCACTGTGCAGATAGGGAACCGAGTGCTCTATGTCTTCTTCACGCATGTGCGTGAGCTTTTCGGTGACGTGGTTCTGAAACCAGTCGTGCATCCTCTGCGCTGGTCCAACGTAGCCACCATGCCAGCCTTGCCCGACACCCAGGAGAGCATTAAGGAGGAGATCCGGAGACAGGAGTTCCTGCTGAACCGCCTGCACAGAGACTTGCAGGCTGGGATAAAGGACCTGTCCAAAGAGGAGCGCCTGTGGGAGGTGCAGCGTATCCTCACCGCTCTTAAACGCAAACTGCGTGAGGCCAAGAGACAGgaatgtGAGAGTAAGATAGCACAGGAGATCGCCAGCCTGTCTAAAGAAGACGTGTCCAAAGAGGAGATGTCTGAGAATGAAGAGGAGGTCCTTAACATTCTCCTGGCTCAGGAGAATGAGATACTGACCGAGCAGGAGGAGCTGATCGCTTTGGAGCAGGTCCTGCGCAGGCAGATCGCCACGGAGAAGGAGGAGATCGAACGACTGCGTGCTGAGATTGCTGACATACAGAGccggcaACAGGGCCGAAGTGAGACAGAAGAGTACTCATCAGACAGCGAGAGTGAGAGCGAGGACGAGGAGGAGCTGCAGATTATTCTGGAAGATCTACAGAAGCAGAATGAGGAGCTGGagAACAAGAACACTCATCTGAACCAGGCCATCCACGAGGAGCAAGAGGCTATTTTGGAGCTCCGTGTTCAGCTCCGCCTCCTTCAGAGTCAAAAGCTGCAGCAGGAGCACACAGCTCCTCCCACAGCGGAGCAGGCCCCAGCCACACAGCCCAGCCCAGAGGAGCGATCCAGAGCCGATGAGCCGATCAAACGCAGCGTACCCGCATCCATGGCAGCCCCAGGTGATGCCAGTGTCGCCGCTTCTACAGCTCCAGCCAATGGGAAGCCGGGAAAGGACACTTTAAAAGTTTCACCTAGTAAAACATACGCCGTTAATCAAAATCCACCAATATAGATCAAACACGAGATTAATGTCTGTTGTATTGTGGCCAGTGGGTGACGTTTTAAGGCTCAGTGTGTGCAATCACTCACAGGTTTGAACACAATTAGGGAGATAtgataaaaagatgaaaaattagATGAAGGTGAAGGGATTAAACCACAGTGGGTGTGGTAGAGGTGTcatgatattttcttttttttttggagtggtgtcataaactaaattaaaatatatctaaataaaattatatctaTAATAAAAAGAGCTTCAGCATAAATTTGGTTAGGATTTAATTTTACTGTTGTTCAAACCCAGGCAATACTAATTCCCAGGAAAATACTTATTTCTGTTATTCCTCAAATAATTCTGggaatgtattaatatttatgagCTACTTGCTAGAAAAAGTTTATTTCTCATAGGGGATTAAAAAATTTTGTTCTCTTCATTTCTCGACACTTTTTGGGGTGGGGGGGGAGGGGGGGTGTCCAGGCCCAGGCCCAGGCCCAGGCCCAGGCCCAGAATTAAGATCGAAGAAGTCCTCCAGGTTAtttctgaaggtgtgtgtgcacgtgtgtgtgagatatgaaACCACTGTGCCATAGGTGAATGACTACAACCGGACCGAAGTTTTAcactgaagaaataaaacagatcaGACGAAGAAGTTCAGATGctcttattttatatatttgcattatttaaatatctgtgCTTTTGATTATATTTAGTGTTCAGACTAAACTGAAATAAAGTGCAAATGTACAATG
>XM_034314855.1
TTTCCCAGAATTCAAAGCGAACGCAAACTGCGCAAACTCGCGTCACAGTTGGCACGTAAACACAGCAACAGGAAGCAGCTCTGTGAAAATGACTCCTAGCAGtaTGGAGAGGTGACGCGTCATCAGATTGTAACTGATAGCAGGGCAGCGTGCCGTGATCAGCCAATAGGAAAGCGGCAGCACAATGACTGAGTGCTTCCTGCCACCCAATAGCAGCCCTGCAGAGCAGCGGCGAGGAGCGGAGCATCAGAGCGGCGTGCCTCGGACCCCCAGCTCAGAGGAAATCAGCCCCACTAAATTCCCAGGGCTGTACCGCACAGGCGAACCATCACCGCCACATGATGGACACCACCATGAGCCTCCCGACGCTGCCTCTGATGATGATAAGGAGCAcagcaagaagaagaacaagTTCAAGAAAAAGGAGAAACGCACTGAGGGCTACGCTGCCTTCCAGGAGGATAGCTCGGCTGACGAGGCCGAGAGCCCGTCCAAGATGAAGCGCTCCAAAGGCATCCACGTGTTCAAGAAGCCCAGCTTCTccaagaagaaggagaaggactTTAAAGTGAAGGAAAAAGGCCCCAAAGAGGAGAAGGCCAAGGACAAGAAGTCCAAGGACTTGACTGCAGCTGACGTGGTCAAGCAgtggaaggagaagaagaagaagaaaaagccaAGCACTGCAGAACCGGAGCCAGTCGCTGTGGAGACTCCAGCCACAGTCAGACCCATTTTCGGTGCGCCGTTAGCTGAAGCAGTGAGGAGGACGGCGCTGTACGATGGAATCCAGCTGCCTGCCATTTTCCGCGAGTGCATTGACTACATCGAGAGCTATGGCATGAAGTGTGAAGGCATCTACCGCGTCTCCGgaatGAAGTCGAAAGTGGATGAGCTGAAGGCGGCGTACGACCGCGAGGAGTGCCCGTGCCTGGAGGAGTACGAGCCGCACACTGTGGCCAGCCTAATGAAGCAGTACCTGCGCGAGCTGCCCGACAACCTCCTGGGCCGAGATTTGGCGCCGCGGTTTGAGGATGCATGCAGCCGCTCCAGCGAGGCAGAGAAGCTTCATGAGTTCCAGCGGCTGCTGGCTGAGGTTCCTGAGGGAAGCAGGCTGCTCTTGTCATGGCTCATCACTCATATGGACCACGTGATCGCCCGTGAGGCAGACACCAAGATGAACATCCAGAACATCTCCATTGTGCTCAATCCCACTGTGCAGATAGGGAACCGAGTGCTCTATGTCTTCTTCACGCATGTGCGTGAGCTTTTCGGTGACGTGGTTCTGAAACCAGTCGTGCATCCTCTGCGCTGGTCCAACGTAGCCACCATGCCAGCCTTGCCCGACACCCAGGAGAGCATTAAGGAGGAGATCCGGAGACAGGAGTTCCTGCTGAACCGCCTGCACAGAGACTTGCAGGCTGGGATAAAGGACCTGTCCAAAGAGGAGCGCCTGTGGGAGGTGCAGCGTATCCTCACCGCTCTTAAACGCAAACTGCGTGAGGCCAAGAGACAGgaatgtGAGAGTAAGATAGCACAGGAGATCGCCAGCCTGTCTAAAGAAGACGTGTCCAAAGAGGAGATGTCTGAGAATGAAGAGGAGGTCCTTAACATTCTCCTGGCTCAGGAGAATGAGATACTGACCGAGCAGGAGGAGCTGATCGCTTTGGAGCAGGTCCTGCGCAGGCAGATCGCCACGGAGAAGGAGGAGATCGAACGACTGCGTGCTGAGATTGCTGACATACAGAGccggcaACAGGGCCGAAGTGAGACAGAAGAGTACTCATCAGACAGCGAGAGTGAGAGCGAGGACGAGGAGGAGCTGCAGATTATTCTGGAAGATCTACAGAAGCAGAATGAGGAGCTGGagAACAAGAACACTCATCTGAACCAGGCCATCCACGAGGAGCAAGAGGCTATTTTGGAGCTCCGTGTTCAGCTCCGCCTCCTTCAGAGTCAAAAGCTGCAGCAGGAGCACACAGCTCCTCCCACAGCGGAGCAGGCCCCAGCCACACAGCCCAGCCCAGAGGAGCGATCCAGAGCCGATGAGCCGATCAAACGCAGCGTACCCGCATCCATGGCAGCCCCAGGTGATGCCAGTGTCGCCGCTTCTACAGCTCCAGCCAATGGGAAGCCGGGAAAGGACACTTTAAAAGTTTCACCTAGTAAAACATACGCCGTTAATCAAAATCCACCAATATAGATCAAACACGAGATTAATGTCTGTTGTATTGTGGCCAGTGGGTGACGTTTTAAGGCTCAGTGTGTGCAATCACTCACAGGTTTGAACACAATTAGGGAGATAtgataaaaagatgaaaaattagATGAAGGTGAAGGGATTAAACCACAGTGGGTGTGGTAGAGGTGTcatgatattttcttttttttttggagtggtgtcataaactaaattaaaatatatctaaataaaattatatctaTAATAAAAAGAGCTTCAGCATAAATTTGGTTAGGATTTAATTTTACTGTTGTTCAAACCCAGGCAATACTAATTCCCAGGAAAATACTTATTTCTGTTATTCCTCAAATAATTCTGggaatgtattaatatttatgagCTACTTGCTAGAAAAAGTTTATTTCTCATAGGGGATTAAAAAATTTTGTTCTCTTCATTTCTCGACACTTTTTGGGGTGGGGGGGGAGGGGGGGTGTCCAGGCCCAGGCCCAGGCCCAGGCCCAGGCCCAGAATTAAGATCGAAGAAGTCCTCCAGGTTAtttctgaaggtgtgtgtgcacgtgtgtgtgagatatgaaACCACTGTGCCATAGGTGAATGACTACAACCGGACCGAAGTTTTAcactgaagaaataaaacagatcaGACGAAGAAGTTCAGATGctcttattttatatatttgcattatttaaatatctgtgCTTTTGATTATATTTAGTGTTCAGACTAAACTGAAATAAAGTGCAAATGTACAATG

Function

symbol description
ralbp1 Predicted to enable GTPase activator activity. Predicted to be involved in endocytosis; positive regulation of GTPase activity; and small GTPase mediated signal transduction. Predicted to act upstream of or within signal transduction. Predicted to be active in membrane. Is expressed in central nervous system; midbrain; midbrain neural keel; and neural plate. Human ortholog(s) of this gene implicated in pancreatic adenocarcinoma. Orthologous to human RALBP1 (ralA binding protein 1).

NR:

description
ralA-binding protein 1

GO:

id name namespace
GO:0007165 signal transduction biological_process
GO:0005622 intracellular anatomical structure cellular_component

KEGG:

id description
K08773 RALBP1; RalA-binding protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034314854.1 True 2998 mRNA 0.51 10 14438363 14450439
XM_034314855.1 False 2961 mRNA 0.51 10 14438396 14450439

Neighbor

gene id symbol gene type direction distance location
sirt6 sirt6,LOC107667852 coding upstream 66170 14344594 ~ 14372193 (+)
rnf126 rnf126,LOC107569633,LOC107754583,LOC107596227,LOC107750906,LOC105909243 coding upstream 422992 14006357 ~ 14015371 (+)
twsg1a twsg1,tws1a,LOC106579643 coding upstream 434663 13988603 ~ 14003700 (+)
ankrd12 ankrd12,LOC108280287 coding upstream 453307 13949726 ~ 13985056 (+)
ndufv2 ndufv2,LOC107596229,LOC107754586,LOC107696125 coding upstream 490571 13932646 ~ 13947792 (+)
LOC113533212 LOC108280212,LOC108427118,LOC568754,LOC107558277,LOC107667866,LOC107729992,LOC107600185,LOC107750900,LOC107696035 coding downstream 31237 14481676 ~ 14487383 (+)
gna11b gna11b,LOC103033252,LOC108280682,LOC108427217,LOC105889474,LOC107600186,LOC107667855,LOC107696027,LOC107558284 coding downstream 99870 14550309 ~ 14594321 (+)
chico chico,aes,LOC108280588,LOC108427216,LOC107558286,LOC107667856,LOC106574496 coding downstream 152330 14602769 ~ 14628849 (+)
scn12aa scn12aa,LOC100304599,LOC108427209,LOC107655859,LOC107713684,LOC107558292 coding downstream 327783 14778222 ~ 14804806 (+)
LOC113533364 epb41l3,LOC108280699,LOC108427206 coding downstream 668054 15118493 ~ 15139852 (+)
LOC117595736 NA non-coding upstream 12065 14404979 ~ 14426298 (+)
G320149 NA non-coding upstream 123045 14315061 ~ 14315318 (+)
G320150 NA non-coding upstream 125477 14312252 ~ 14312886 (+)
G320099 NA non-coding upstream 194209 14243952 ~ 14244154 (+)
G320095 NA non-coding upstream 197160 14240982 ~ 14241203 (+)
G320211 NA non-coding downstream 4944 14455383 ~ 14456457 (+)
G320212 NA non-coding downstream 8233 14458672 ~ 14459009 (+)
G320371 NA non-coding downstream 98784 14549223 ~ 14560613 (+)
G320386 NA non-coding downstream 163560 14613999 ~ 14671669 (+)
G320797 LOC108280451 non-coding downstream 773432 15223871 ~ 15226072 (+)
zmp:0000000521 zmp:0000000521,LOC108280721,LOC107696078,LOC108442439,LOC107596226,LOC105888700 other upstream 311351 14080249 ~ 14127012 (+)
LOC113533270 mtcl1 other upstream 540449 13837433 ~ 13897914 (+)
sema6ba si:ch211-168n16.1,LOC108280795,LOC108433102,LOC107713651,LOC107600229,LOC107757803,LOC107662975,LOC107698499,LOC105903857 other upstream 1283836 13021142 ~ 13154527 (+)
G319170 NA other upstream 1635344 12765055 ~ 12803019 (+)
G318439 NA other upstream 2968864 11467299 ~ 11469499 (+)
tle2c zgc:136336,LOC108280589,LOC108427215 other downstream 187342 14637781 ~ 14666508 (+)
ly97.3 LOC108280687 other downstream 376803 14827242 ~ 14828778 (+)
LOC113533366 NA other downstream 613282 15063721 ~ 15066371 (+)
LOC113533365 LOC108280254 other downstream 631799 15082238 ~ 15101461 (+)
fcer1gl LOC100304589 other downstream 799076 15249515 ~ 15253555 (+)

Expression


Co-expression Network