LOC117599990 (LOC108280298)


Basic Information

Item Value
gene id LOC117599990
gene name LOC108280298
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 21217823 ~ 21219726 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034314870.1
ttttatttttttctgatttatctGATGGAGCTGAGCAGGAAAGAAGTTCCACTTTATggacaGGCAAGAGTCTTTGTGTTAATTCCATCTCAAACAGAATCGGAGGAAATGTTTGTGGTTTTAGAAGGTTCAAGTTTAATTCACGTTCTACAgactaaagtacacactctgaCCTACTTCATCACTCCAGGCCATAACCAGCaggagacagtgtgtgtgagagcataCACACATGTTAGAGGTGTGCTGCGGTATGTTGGTGTGTCATTTCTGAAGTATGTTGAGGACGATGCACAGGAGATGGCTGAGTACTTTGTATCCCATAGCAACCAGCTTGGCACTATCGAATACAGCGATCTGATTGGTCGATACGATCTGAGTGACAGCAGTGTGCGAGCAGAGATGGATAAAAAAGTTGCACTTGCTCTGGCAAACCTTCAGACCAACCACAACCTGCTGAACCACACACAcggtgctctgtgtgtgtgtatgtgtgtttttgtgtgtgtatgtgtgtgaaggttCTGTTTAATGTCCAGCTTACACACACATCCGGAATTCAGTTATAATTAAAGCCAGAGCTGTAATAAAATttcatcaccatggcaaccagaGAGTAAACTAATTacactgacagtgtgtgtttgtgtgtgtgtgtgtgtttctgttc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034314870.1 True 670 mRNA 0.43 3 21217823 21219726

Neighbor

gene id symbol gene type direction distance location
LOC113525405 LOC108280416 coding downstream 128 21199196 ~ 21217695 (-)
LOC117599949 LOC108280418 coding downstream 26653 21183325 ~ 21191170 (-)
gpr55a LOC108280411 coding downstream 45492 21167393 ~ 21172331 (-)
ngef ngef,LOC104956402 coding downstream 53034 21147881 ~ 21164789 (-)
LOC113525403 NA coding downstream 70785 21138675 ~ 21147038 (-)
insl3 LOC108280363 coding upstream 4090 21223816 ~ 21224580 (-)
si:rp71-39b20.4 LOC108280329,LOC103032005,LOC108415754 coding upstream 6068 21225794 ~ 21228030 (-)
angptl4 LOC108280821 coding upstream 10464 21230190 ~ 21234613 (-)
G323989 NA non-coding downstream 19492 21198090 ~ 21198331 (-)
LOC117599984 NA non-coding downstream 71117 21139370 ~ 21146706 (-)
LOC117599936 NA non-coding downstream 227515 20981438 ~ 20990308 (-)
G323907 NA non-coding downstream 271755 20932834 ~ 20946068 (-)
G323923 NA non-coding downstream 352873 20864465 ~ 20864950 (-)
G324001 NA non-coding upstream 2450 21222176 ~ 21222600 (-)
si:ch1073-429i10.3 h3f3b,H3F3A,LOC105909691,LOC107388308,LOC107572204,LOC101073377 other downstream 79998 21135118 ~ 21137825 (-)
G323963 actn4,LOC102780626 other downstream 120114 21052207 ~ 21097709 (-)
LOC113524960 LOC108280415 other downstream 241451 20946136 ~ 20976372 (-)
G323902 NA other downstream 387719 20828026 ~ 20830104 (-)
sh3glb1b sh3glb1,LOC108280317,LOC107700566,LOC107677816,LOC107732941,LOC108414852,LOC107553268,LOC102780267,LOC107382675,LOC103377018 other downstream 503806 20666291 ~ 20714017 (-)

Expression


Co-expression Network