LOC113543359 (LOC108280252)


Basic Information

Item Value
gene id LOC113543359
gene name LOC108280252
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 4174793 ~ 4183429 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034314876.1
GAACATGGTTTCCtttgtgtatgtgcatatgCATGCAGCAGAGAGACAAAGCTAAATTGTGAACTGAAAGAAATCAGTAGTTTCTACACAAATCGACAGGCAAGCACACAAGAATCTAAGGCATCTACTCagGATCTGATGAGCgatggagagaggagaaggCAACAGCTCAGTCTCTCAAGGTCACAACTGTAACCATTCAGAGGAATACAAATTCACCACCTACACCGTGGTCTTCAGCCTGGTCTTTATTTTTGGTCTCTTGGGCAATGCTGGCGCTCTGTACGTCTTCTGCAAGCTCTCGGTGAAGAATCGTCTCTCTACTATCATTCTCATCCACCTTGCTGTATCAGACCTGATCTTCATCCTTACATTGCCACTAAGGATCGCCTTTTACTCCAACAACTCAGCTGGTATGCAGGAATCTTCTCCCAGGTCCACAATGTCACATTTGAACCTTGCCTGCCGTTTCTCCACCTTCTTGTTCTACATCAGCATGTATTGCAGCATTTTCTTTCTGACAGCCCTTAGCGTGTGCCGCTACCTGGTGCTAGCAGGTCGAGTTCGGCTCCAGAACAGTGAGGCTTGCAGATGGGCTCGCTTCCTGTGCTGGGGAATCTGGGTTTTTGTGATAGGGGGGAACATTTTATACCTTGGTATAATCACTGGGTTCAGCATGCAGGCAGAGGGATGCCTGGAACCAGCAGGGAAAGAGTCCTGGGCTTTGGTGTATCGTCTGAACCTGGTGGTGCTGGTGATCTGCTTTTTGCTTCCGCTAACAGTGGTGTTGATTTGCTACTGCCTCATGATCAGACACATCTTGAGGATCCGTGCTGGCCAAAGGCAGCGTGATGTGGCTCTGATCTGCTTGGTGCTTTTgatcttctgtttttgtttcctcCCTTACCACATCCAACGCACGCTGCACCTCCACCATATGATGTACCAGCACCCAGAGGCATGCCAGTTGCTGGCCACCTTGCAGAAATCGGTGGTGGTGACGCTGTGCTTTGCTGCAGTCAACAGTTGCCTGGATCCACTTCTCTTCCTGTTTGTGGGCCATGGTTTCAAAACAGTGATCAATAAGTTCATTGCTCGTGCACACCTTTCTTGGGCACTAGAGAATACCAATTTGAGTTCCATGGCTCCAGCTGTTGTGCAGCTACCATTGGTTGGAGAACCAAATACAACAAACAGGGACCAAGGTTTCTCTATGGAGCTGCTACTCTCCCagaaaaatgatattactgtTTGATGGCTCCATCAACATTGATGGCTCTTCAACCAAGGAAGTGGGAGGGCGTTTAAATCTGCCATGCTTAGTCCAGTGACACAAGGCAACAAAAAATGTCTGCTAGACTTTTTGGGGTATTTTTTCTTCCTTGGCGCTTGAATTAAACAGACATTGCTCCAGCCTAGTCTCATTTTCTGCCTTATTACAGCTGATGTGTGTCTTCTAGACTCACTAAGAGAACAGTCAAGATTATAAAACAAGTGGATAGTTGTGCCGTGTGTTCCTCCAGACAGGCGGTAATAATTAGAGAAAAAAGGGAGCAAATGAACTACACCATACATCTGCAGTTCATCAACCTTATGATCTGACAAACTCTTTAAGCAGACTGGCTTTTAAGAGCCACAGTGGTTAGaacattttgatttgacatCTAAGCAGGTTTTCTAAGAAATCTCATTCTTTGATCAATGTGTATGACAGTTAAGGAACCTGAGCAGATCAGTAGTTAGACTGTGTTGGTTTCACTTTGTAAGCACATTGTCCTGGACAGCTATGAGCATGTGAATATATTCACAAAGTAGATAAGCCTGGTTTAGCTATATCAAAAGATTAACAAAGTGCACATGGCAAGGCATGTACCACATTCCATGACTGATATCTTAAAGATGTGTGTCTTCTTCCTGCCAAGTGCAAAAGCATCCTCTTTTTCATAAAGTCTGTTTCAAACTGCATTCTGATTTGATCACAGTTCATTTAAAGTGCCTTAAAGTTAATGCTTACAGTAATAAGCCCTTAACATGGAAGCCAAAATGATACGTTATCCCAGAATACTTTTGATTAACTAAGTTTATTGGAATGGGTATCATTTAAATTCATCCCTGCCACAAGATAAAGTGCCTTTACATAtaagatgtttaaaaatggtATAGAAGCCTGTTCTAATATCTATCACACCATACTTATTATCCTGCTGTGGATTTAGTGGGAATCAGCTGCCAAAATATTTAACCATAGATAATTATCCCATgctaaatgtaacattttaggAATAGCACAAGTTTTTTTTCACCCCTGTCCTTGACTCAGGAAAGGTATTTAATTAACTGATTCAAGTCCATCACAGGTTAGGAGAGATGGATTGGTAAATCCTGGGCCTCTGGGCAGGAACCTATTCAGGAACCCTCTCGCCACCCCATTAGGCATGAACCAGTGGAAGGAACCCTTCGTACCCCACAACCCAGCACATGCAATATTAAATGCACTGTACTTCAGTAAACATCTATTATGAATATTTGAGTAGTTTCGGTGATACTTTGGAACACAGTCTCACTGCAGTCGCATCCAATTTATTTCAGGCTCTGCGACTTTACATCCATTGGCTTATATTCCATGAATCGTGTTTTGTGTGACAGCTTAATGGCCTAGTCCTTCTTAAATCGACGCTACAAGGACCATTAGTGGCCATGGTTCCTGAGCATGTGCCCAGTAGGTTGCTGATTGCAATCAATCCCTATAGGGGTGGCACAGGGGTGCAATGGGTAGCCTTGGGTCATTCGTGAGCTTGGGgaactgtgtggagttttgcatgttctccccatgtacATATAGGTGTTCACCAGGCTCTTCAATtacctccaaaaaacatgccagtaggtggattggtgactctaacttgccctagttgtgaatgaatgtgcaaatgtgtgtgcgtggtgccctGTGACAGaatggcgtcccatccagggtgtgttcctcgGATAAGCTTTGGATCTGCCATGACGCTCCAGGATAAAGAGCTTGAATGAATCTAGTGGAATGATCTGTTTGTATTGTTaaatcttttgtgttttatacTCTAAATCCTTCATAAGGACACAGGCAAAATCTTTTCAATACcaacacattcacattttcatacatttcaCATTCTTTAGGAGAGATTTGTTCCAAACAGATCATTTATCTCACATTTTGTGGCAGGCTGTCTCTGGTGATTTCCATCTTATTTGCAGAATTCCCTTTGATAATCAGTATGCTGTGTTTTTTGGCAGAAAGAGCTTCATGTTAATGCTAGTCCCTGAAGACTCGGtccaaaaatggaaatgaaaagcTAGCATGATTTTAGAATTATACTTAAACCATACTTGGAGATTTTGTTACTGC
>XM_034314877.1
ggtaaaagtaacttcAGTTCATGATCTGATGAGCgatggagagaggagaaggCAACAGCTCAGTCTCTCAAGGTCACAACTGTAACCATTCAGAGGAATACAAATTCACCACCTACACCGTGGTCTTCAGCCTGGTCTTTATTTTTGGTCTCTTGGGCAATGCTGGCGCTCTGTACGTCTTCTGCAAGCTCTCGGTGAAGAATCGTCTCTCTACTATCATTCTCATCCACCTTGCTGTATCAGACCTGATCTTCATCCTTACATTGCCACTAAGGATCGCCTTTTACTCCAACAACTCAGCTGGTATGCAGGAATCTTCTCCCAGGTCCACAATGTCACATTTGAACCTTGCCTGCCGTTTCTCCACCTTCTTGTTCTACATCAGCATGTATTGCAGCATTTTCTTTCTGACAGCCCTTAGCGTGTGCCGCTACCTGGTGCTAGCAGGTCGAGTTCGGCTCCAGAACAGTGAGGCTTGCAGATGGGCTCGCTTCCTGTGCTGGGGAATCTGGGTTTTTGTGATAGGGGGGAACATTTTATACCTTGGTATAATCACTGGGTTCAGCATGCAGGCAGAGGGATGCCTGGAACCAGCAGGGAAAGAGTCCTGGGCTTTGGTGTATCGTCTGAACCTGGTGGTGCTGGTGATCTGCTTTTTGCTTCCGCTAACAGTGGTGTTGATTTGCTACTGCCTCATGATCAGACACATCTTGAGGATCCGTGCTGGCCAAAGGCAGCGTGATGTGGCTCTGATCTGCTTGGTGCTTTTgatcttctgtttttgtttcctcCCTTACCACATCCAACGCACGCTGCACCTCCACCATATGATGTACCAGCACCCAGAGGCATGCCAGTTGCTGGCCACCTTGCAGAAATCGGTGGTGGTGACGCTGTGCTTTGCTGCAGTCAACAGTTGCCTGGATCCACTTCTCTTCCTGTTTGTGGGCCATGGTTTCAAAACAGTGATCAATAAGTTCATTGCTCGTGCACACCTTTCTTGGGCACTAGAGAATACCAATTTGAGTTCCATGGCTCCAGCTGTTGTGCAGCTACCATTGGTTGGAGAACCAAATACAACAAACAGGGACCAAGGTTTCTCTATGGAGCTGCTACTCTCCCagaaaaatgatattactgtTTGATGGCTCCATCAACATTGATGGCTCTTCAACCAAGGAAGTGGGAGGGCGTTTAAATCTGCCATGCTTAGTCCAGTGACACAAGGCAACAAAAAATGTCTGCTAGACTTTTTGGGGTATTTTTTCTTCCTTGGCGCTTGAATTAAACAGACATTGCTCCAGCCTAGTCTCATTTTCTGCCTTATTACAGCTGATGTGTGTCTTCTAGACTCACTAAGAGAACAGTCAAGATTATAAAACAAGTGGATAGTTGTGCCGTGTGTTCCTCCAGACAGGCGGTAATAATTAGAGAAAAAAGGGAGCAAATGAACTACACCATACATCTGCAGTTCATCAACCTTATGATCTGACAAACTCTTTAAGCAGACTGGCTTTTAAGAGCCACAGTGGTTAGaacattttgatttgacatCTAAGCAGGTTTTCTAAGAAATCTCATTCTTTGATCAATGTGTATGACAGTTAAGGAACCTGAGCAGATCAGTAGTTAGACTGTGTTGGTTTCACTTTGTAAGCACATTGTCCTGGACAGCTATGAGCATGTGAATATATTCACAAAGTAGATAAGCCTGGTTTAGCTATATCAAAAGATTAACAAAGTGCACATGGCAAGGCATGTACCACATTCCATGACTGATATCTTAAAGATGTGTGTCTTCTTCCTGCCAAGTGCAAAAGCATCCTCTTTTTCATAAAGTCTGTTTCAAACTGCATTCTGATTTGATCACAGTTCATTTAAAGTGCCTTAAAGTTAATGCTTACAGTAATAAGCCCTTAACATGGAAGCCAAAATGATACGTTATCCCAGAATACTTTTGATTAACTAAGTTTATTGGAATGGGTATCATTTAAATTCATCCCTGCCACAAGATAAAGTGCCTTTACATAtaagatgtttaaaaatggtATAGAAGCCTGTTCTAATATCTATCACACCATACTTATTATCCTGCTGTGGATTTAGTGGGAATCAGCTGCCAAAATATTTAACCATAGATAATTATCCCATgctaaatgtaacattttaggAATAGCACAAGTTTTTTTTCACCCCTGTCCTTGACTCAGGAAAGGTATTTAATTAACTGATTCAAGTCCATCACAGGTTAGGAGAGATGGATTGGTAAATCCTGGGCCTCTGGGCAGGAACCTATTCAGGAACCCTCTCGCCACCCCATTAGGCATGAACCAGTGGAAGGAACCCTTCGTACCCCACAACCCAGCACATGCAATATTAAATGCACTGTACTTCAGTAAACATCTATTATGAATATTTGAGTAGTTTCGGTGATACTTTGGAACACAGTCTCACTGCAGTCGCATCCAATTTATTTCAGGCTCTGCGACTTTACATCCATTGGCTTATATTCCATGAATCGTGTTTTGTGTGACAGCTTAATGGCCTAGTCCTTCTTAAATCGACGCTACAAGGACCATTAGTGGCCATGGTTCCTGAGCATGTGCCCAGTAGGTTGCTGATTGCAATCAATCCCTATAGGGGTGGCACAGGGGTGCAATGGGTAGCCTTGGGTCATTCGTGAGCTTGGGgaactgtgtggagttttgcatgttctccccatgtacATATAGGTGTTCACCAGGCTCTTCAATtacctccaaaaaacatgccagtaggtggattggtgactctaacttgccctagttgtgaatgaatgtgcaaatgtgtgtgcgtggtgccctGTGACAGaatggcgtcccatccagggtgtgttcctcgGATAAGCTTTGGATCTGCCATGACGCTCCAGGATAAAGAGCTTGAATGAATCTAGTGGAATGATCTGTTTGTATTGTTaaatcttttgtgttttatacTCTAAATCCTTCATAAGGACACAGGCAAAATCTTTTCAATACcaacacattcacattttcatacatttcaCATTCTTTAGGAGAGATTTGTTCCAAACAGATCATTTATCTCACATTTTGTGGCAGGCTGTCTCTGGTGATTTCCATCTTATTTGCAGAATTCCCTTTGATAATCAGTATGCTGTGTTTTTTGGCAGAAAGAGCTTCATGTTAATGCTAGTCCCTGAAGACTCGGtccaaaaatggaaatgaaaagcTAGCATGATTTTAGAATTATACTTAAACCATACTTGGAGATTTTGTTACTGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034314876.1 True 3397 mRNA 0.43 2 4174793 4183429
XM_034314877.1 False 3287 mRNA 0.43 2 4179986 4183429

Neighbor

gene id symbol gene type direction distance location
tagln LOC108280395,LOC108424042,LOC103045968,LOC107567684 coding upstream 206442 3962755 ~ 3968351 (+)
trnap-ugg_21 NA coding upstream 227787 3946935 ~ 3947006 (+)
pmvk pmvk coding upstream 357939 3813253 ~ 3816854 (+)
nt5c3a nt5c3a,LOC107697280,LOC107720166,LOC107581689,LOC107714420 coding upstream 512106 3647747 ~ 3662687 (+)
LOC113543357 NA coding upstream 528121 3642315 ~ 3646672 (+)
igsf10 igsf10 coding downstream 42069 4225498 ~ 4238706 (+)
p2ry12 LOC108280198 coding downstream 68441 4251870 ~ 4256834 (+)
LOC113543045 LOC108280189 coding downstream 74936 4258365 ~ 4263286 (+)
LOC113543038 LOC108280160,LOC108424050 coding downstream 83661 4267090 ~ 4276958 (+)
LOC113543011 LOC108280892 coding downstream 99738 4283167 ~ 4290110 (+)
G314222 NA non-coding upstream 174479 3996502 ~ 4000314 (+)
LOC117599982 NA non-coding upstream 279108 3888027 ~ 3895685 (+)
G313990 NA non-coding upstream 328698 3845857 ~ 3846095 (+)
G313949 NA non-coding upstream 354884 3773070 ~ 3819909 (+)
G313975 NA non-coding upstream 366103 3807148 ~ 3808690 (+)
G314362 LOC108280893 non-coding downstream 106825 4290254 ~ 4293729 (+)
G314364 NA non-coding downstream 111436 4294865 ~ 4295074 (+)
G314402 NA non-coding downstream 196208 4379637 ~ 4384865 (+)
G314404 NA non-coding downstream 334172 4517601 ~ 4527820 (+)
G314609 NA non-coding downstream 596509 4779938 ~ 4780145 (+)
LOC113543208 LOC108280571,LOC108435486 other upstream 685426 3423567 ~ 3489367 (+)
trnat-agu_12 NA other upstream 1285405 2889315 ~ 2889388 (+)
G313445 fbxl7,LOC108280577,LOC107689422,LOC105900492 other upstream 1498945 2675281 ~ 2675848 (+)
LOC117599997 LOC108280771,LOC108435500 other upstream 1512394 2655200 ~ 2662399 (+)
G313112 zswim5 other upstream 1989116 2181979 ~ 2185677 (+)
LOC113543063 stx1a,LOC105005600,LOC102795677 other downstream 409011 4592440 ~ 4762095 (+)
pou3f2b pou3f3,pou3f3a,LOC108280934,LOC105896554,LOC108266720 other downstream 604419 4787848 ~ 4789835 (+)
LOC113543089 mbp other downstream 718041 4901470 ~ 4958121 (+)
sptssb sptssb,LOC107567691,LOC107703014,LOC107750122 other downstream 904410 5087839 ~ 5091273 (+)
kpna4 kpna4,LOC107703033,LOC107750083,LOC107720438,LOC107662578 other downstream 1017592 5201021 ~ 5216591 (+)

Expression


Co-expression Network