LOC113533661


Basic Information

Item Value
gene id LOC113533661
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 10847468 ~ 10847786 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_003403440.2
GCCCAGTGATGATACCAAGGCGAATGTGAGCTTACTGGATGCGAGTCTGAGTTCTCCTGTGTTCCTATTGGCTGGTAATCTTGACAGGGCAGTGGAGTTTTGCTGCTTTGTTGTAAGGGCCAGCCTACAGTCACCAAGCCCCTTCACTCACACTCTTCTCTAGAGTAATGCTGGGGAGAGAGTGAAAGggcagacagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttgtagactcAGATAGAATCTCAGCTCTGCTGTATCCAGTAGCCTATGAACTGCATCTTTGGTAATCTGAGGGTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_003403440.2 True 319 lncRNA 0.49 1 10847468 10847786

Neighbor

gene id symbol gene type direction distance location
mul1a LOC108280869 coding upstream 128319 10711708 ~ 10719149 (+)
vwa5b2 LOC108280745 coding upstream 142976 10655409 ~ 10704492 (+)
ccl20a.4 NA coding upstream 313017 10532984 ~ 10534451 (+)
kirrel1b kirrelb,LOC108280344,LOC108428281,LOC107749112,LOC107659821,LOC107557870,LOC107721762 coding upstream 500080 10291830 ~ 10347388 (+)
cadm3 cadm3,LOC107749121,LOC107600075 coding upstream 559244 10196108 ~ 10288224 (+)
acsm3 acsm3,LOC108428295,LOC107749205,LOC107682913,LOC107735424 coding downstream 14173 10861959 ~ 10878656 (+)
map6d1 LOC108280841 coding downstream 32455 10880241 ~ 10897751 (+)
LOC113533503 cul3,LOC108261246,LOC104924156,LOC100710156,LOC107099750,LOC108240497 coding downstream 340012 11187798 ~ 11221863 (+)
ap1s3b ap1s3b,LOC108280899,LOC108428267,LOC107738797,LOC107660160,LOC107679405,LOC107552497,LOC107567705 coding downstream 390453 11238239 ~ 11253682 (+)
LOC113533219 LOC108280465,LOC108280463,LOC108280461 coding downstream 460235 11308021 ~ 11315878 (+)
LOC113533665 NA non-coding upstream 1456 10845716 ~ 10846012 (+)
G318031 alg3,LOC107692886,LOC107730451,LOC107557882 non-coding upstream 139960 10706814 ~ 10707508 (+)
G318016 NA non-coding upstream 199275 10647921 ~ 10648193 (+)
G317967 NA non-coding upstream 265176 10582093 ~ 10582292 (+)
G317964 NA non-coding upstream 271921 10575313 ~ 10575547 (+)
G318248 klhl24 non-coding downstream 112135 10959921 ~ 10987576 (+)
G318273 NA non-coding downstream 160162 11007948 ~ 11009146 (+)
G318331 NA non-coding downstream 259009 11106795 ~ 11169139 (+)
G318332 mbnl1,LOC108280526,LOC107567699,LOC107679403,LOC107745615 non-coding downstream 265167 11112953 ~ 11119827 (+)
G318426 NA non-coding downstream 555478 11403264 ~ 11404056 (+)
camk2n1a camk2n2,camk2n1a,LOC107659987,LOC107600060,LOC107557885 other upstream 113380 10730346 ~ 10734088 (+)
eif4e2 eif4e2,LOC107600102,LOC107579667,LOC107749152,LOC107730458 other upstream 278561 10563821 ~ 10568907 (+)
capn10 capn10 other upstream 284474 10536431 ~ 10562994 (+)
pip4p1a tmem55b,tmem55ba,LOC106600488 other upstream 869552 9958993 ~ 9977916 (+)
G317390 NA other upstream 1432304 9412323 ~ 9415164 (+)
per2 LOC108280459,LOC108439864 other downstream 552098 11399884 ~ 11464769 (+)
G318439 NA other downstream 619513 11467299 ~ 11469499 (+)
G319170 NA other downstream 1917269 12765055 ~ 12803019 (+)
sema6ba si:ch211-168n16.1,LOC108280795,LOC108433102,LOC107713651,LOC107600229,LOC107757803,LOC107662975,LOC107698499,LOC105903857 other downstream 2173356 13021142 ~ 13154527 (+)
LOC113533270 mtcl1 other downstream 2989647 13837433 ~ 13897914 (+)

Expression


Co-expression Network