LOC117595731


Basic Information

Item Value
gene id LOC117595731
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 16394753 ~ 16395539 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004576910.1
CTTTTCTTTCAGCACTTAAACAtgattatgaatatgaaatagAAATTGCACGTGTCCTTAATCCTGAAATTTCTGAGTTAGTGATGCAAGGGCATTTTTGCACTCAGTCATCTTGGTTCAACACTCAGGATTTTGATCATTGAACAGATGGCTGTTTCACCACACTAGCAAACGAACGAGTGAAGATTTGTCCATTCAAGATGCCACTTTCACCAGATGAAAGATCAAGAAGAAGTAAAGAGTGCACAGACTGGAGGTCCGAGGCAGATTCAGGCTCAGATTCAGACAGAGGCCTGGATGTTGAGGCCGGTGATGCAGTTATCACAATTTCACCACCTGTCTGAATATAAGCACTGACTGTGCAGCTACaaactgaaagagaaaaggagaaagaaaaacaaaattaatatttatgtttctcTTTTATGAATGCTTTCCAAGAAAATGTAACTCTTtttaagattaaataaataaataaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004576910.1 True 479 lncRNA 0.37 3 16394753 16395539

Neighbor

gene id symbol gene type direction distance location
cib3 cib3,LOC107687907 coding downstream 2473 16385427 ~ 16392280 (-)
LOC113533484 LOC108280930,LOC108427189 coding downstream 51916 16336003 ~ 16342837 (-)
ap1m1 ap1m1,LOC107696211 coding downstream 67796 16308558 ~ 16326957 (-)
klf2b LOC108280879 coding downstream 164454 16227671 ~ 16230299 (-)
atcayb atcay,LOC108280696,LOC108427182,LOC105906996,LOC105906923 coding downstream 234536 16147863 ~ 16160217 (-)
cirbpa cirbpa,LOC108280649,LOC107655466,LOC107574409,LOC107729620,LOC107665639,LOC107712399 coding upstream 74560 16470099 ~ 16473688 (-)
LOC113533290 midn,LOC108271022 coding upstream 114022 16509561 ~ 16526583 (-)
LOC113533174 LOC108280837 coding upstream 198605 16594144 ~ 16601594 (-)
LOC113533630 pnp5a,LOC108280898,LOC108427136,LOC107692836,LOC107747996,LOC107569603,LOC107728028,LOC108440276,LOC107703870 coding upstream 209859 16605398 ~ 16610978 (-)
LOC113533663 NA coding upstream 224094 16619633 ~ 16619734 (-)
G321465 NA non-coding downstream 19410 16374510 ~ 16375343 (-)
G321354 calr3b,LOC107750920,LOC107696693,LOC108280796,LOC107552714 non-coding downstream 171439 16187976 ~ 16223314 (-)
G321349 NA non-coding downstream 295515 16098868 ~ 16099238 (-)
G321347 NA non-coding downstream 345110 16049442 ~ 16049643 (-)
G321330 NA non-coding downstream 353012 16040881 ~ 16041741 (-)
G321470 NA non-coding upstream 3761 16399300 ~ 16401527 (-)
G321505 NA non-coding upstream 122849 16518388 ~ 16520370 (-)
LOC113533305 NA non-coding upstream 150700 16546239 ~ 16547501 (-)
G321536 NA non-coding upstream 213277 16608816 ~ 16609557 (-)
G321652 NA non-coding upstream 347367 16742906 ~ 16744015 (-)
G321462 NA other downstream 27749 16357574 ~ 16367004 (-)
LOC113533563 NA other downstream 670397 15687082 ~ 15724356 (-)
LOC113533479 LOC108280451 other downstream 1163173 15222778 ~ 15231580 (-)
theg NA other downstream 1649266 14731734 ~ 14745487 (-)
LOC113533556 LOC108280202 other downstream 2714643 13665181 ~ 13680110 (-)
stk11 stk11 other upstream 169169 16564708 ~ 16587816 (-)
trnal-uaa_3 NA other upstream 577988 16973527 ~ 16973770 (-)
G322080 NA other upstream 1104526 17500065 ~ 17500832 (-)
LOC113546399 LOC108280496,LOC108430154 other upstream 1458308 17853847 ~ 17872108 (-)
G322538 NA other upstream 1998710 18394249 ~ 18394823 (-)

Expression


Co-expression Network