LOC117595736


Basic Information

Item Value
gene id LOC117595736
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 14404979 ~ 14426298 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004576913.1
aacactcttacAGTCTTCCAGTTATTTTACCATATAAGGTAAAAGATGGCGCGGAAATTGCTTTTTCTCAAAAACTGGTTTATCGGTATGCAAACATcgcagagggaaagagagagagagagatgagagaagGTGGTCAACCCACAAAATGGCTCCACATCGCCATTGGTTCAGACCGACCTGATAATGTGGGTGGCTCAGTCACCAGAACTTTGCCTGCGGACAACACCCCAAGGCCTGGCTCCAGGGTTGGCTGATTTCAGGATGGTTACACCACAGCTTAGAAATCAGCTTCAGAGAACAGGCTGTTTGTATGGAAGAATCATTTCAGTAACACAGTGAACACAACCTAGTTGGAATTCAGCATTAGATCATTTGAGTAGCTAAATATTGGCACCAACCTGTTACCTTGTAacactatgtacagtacatcAAGGACATTGCTCTCTATGATCAAATGTCTTCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004576913.1 True 466 lncRNA 0.44 3 14404979 14426298

Neighbor

gene id symbol gene type direction distance location
sirt6 sirt6,LOC107667852 coding upstream 32786 14344594 ~ 14372193 (+)
rnf126 rnf126,LOC107569633,LOC107754583,LOC107596227,LOC107750906,LOC105909243 coding upstream 389608 14006357 ~ 14015371 (+)
twsg1a twsg1,tws1a,LOC106579643 coding upstream 401279 13988603 ~ 14003700 (+)
ankrd12 ankrd12,LOC108280287 coding upstream 419923 13949726 ~ 13985056 (+)
ndufv2 ndufv2,LOC107596229,LOC107754586,LOC107696125 coding upstream 457187 13932646 ~ 13947792 (+)
ralbp1 ralbp1,LOC107696059,LOC107667860 coding downstream 12065 14438363 ~ 14450439 (+)
LOC113533212 LOC108280212,LOC108427118,LOC568754,LOC107558277,LOC107667866,LOC107729992,LOC107600185,LOC107750900,LOC107696035 coding downstream 55378 14481676 ~ 14487383 (+)
gna11b gna11b,LOC103033252,LOC108280682,LOC108427217,LOC105889474,LOC107600186,LOC107667855,LOC107696027,LOC107558284 coding downstream 124011 14550309 ~ 14594321 (+)
chico chico,aes,LOC108280588,LOC108427216,LOC107558286,LOC107667856,LOC106574496 coding downstream 176471 14602769 ~ 14628849 (+)
scn12aa scn12aa,LOC100304599,LOC108427209,LOC107655859,LOC107713684,LOC107558292 coding downstream 351924 14778222 ~ 14804806 (+)
G320149 NA non-coding upstream 89661 14315061 ~ 14315318 (+)
G320150 NA non-coding upstream 92093 14312252 ~ 14312886 (+)
G320099 NA non-coding upstream 160825 14243952 ~ 14244154 (+)
G320095 NA non-coding upstream 163776 14240982 ~ 14241203 (+)
G320070 NA non-coding upstream 197912 14206855 ~ 14207067 (+)
G320210 NA non-coding downstream 12418 14438716 ~ 14453951 (+)
G320211 NA non-coding downstream 29085 14455383 ~ 14456457 (+)
G320212 NA non-coding downstream 32374 14458672 ~ 14459009 (+)
G320371 NA non-coding downstream 122925 14549223 ~ 14560613 (+)
G320386 NA non-coding downstream 187701 14613999 ~ 14671669 (+)
zmp:0000000521 zmp:0000000521,LOC108280721,LOC107696078,LOC108442439,LOC107596226,LOC105888700 other upstream 277967 14080249 ~ 14127012 (+)
LOC113533270 mtcl1 other upstream 507065 13837433 ~ 13897914 (+)
sema6ba si:ch211-168n16.1,LOC108280795,LOC108433102,LOC107713651,LOC107600229,LOC107757803,LOC107662975,LOC107698499,LOC105903857 other upstream 1250452 13021142 ~ 13154527 (+)
G319170 NA other upstream 1601960 12765055 ~ 12803019 (+)
G318439 NA other upstream 2935480 11467299 ~ 11469499 (+)
tle2c zgc:136336,LOC108280589,LOC108427215 other downstream 211483 14637781 ~ 14666508 (+)
ly97.3 LOC108280687 other downstream 400944 14827242 ~ 14828778 (+)
LOC113533366 NA other downstream 637423 15063721 ~ 15066371 (+)
LOC113533365 LOC108280254 other downstream 655940 15082238 ~ 15101461 (+)
fcer1gl LOC100304589 other downstream 823217 15249515 ~ 15253555 (+)

Expression


Co-expression Network