LOC117595748


Basic Information

Item Value
gene id LOC117595748
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 20315137 ~ 20315212 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004576925.1
ctccaATGATGACCTCAGTTTTGTGCCACGTGTCTGGGCCACTGATGATCACTGATGGGATTGAGGAACTGAGGAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004576925.1 True 76 ncRNA 0.51 1 20315137 20315212

Neighbor

gene id symbol gene type direction distance location
LOC113546475 NA coding downstream 5564 20309497 ~ 20309573 (-)
fam131a fam131a,LOC108280319,LOC106961227,LOC107570263 coding downstream 14992 20284856 ~ 20300145 (-)
thpo LOC108280322 coding downstream 96546 20211699 ~ 20218591 (-)
zfyve9a zfyve9,LOC108280307 coding downstream 103990 20186038 ~ 20211147 (-)
cdc20 cdc20,LOC107732200,LOC107553255,LOC107700550,LOC107563294,LOC107710546,LOC107677877 coding downstream 157899 20151017 ~ 20157238 (-)
LOC113546384 LOC108280310 coding upstream 22966 20338178 ~ 20350654 (-)
LOC117599977 NA coding upstream 55759 20370971 ~ 20374671 (-)
ubxn7 ubxn7,LOC107677685,LOC107710610,LOC107563300 coding upstream 106960 20422172 ~ 20433542 (-)
ppp1r7 ppp1r7,LOC107700558,LOC107710611,LOC107677693 coding upstream 121277 20436489 ~ 20444429 (-)
gk5 gk5,LOC108442893,LOC108442898 coding upstream 135236 20450448 ~ 20461880 (-)
G323709 NA non-coding downstream 130005 20129253 ~ 20185132 (-)
G323706 NA non-coding downstream 134576 20121770 ~ 20180561 (-)
LOC117599996 NA non-coding downstream 498072 19815214 ~ 19817065 (-)
LOC117599987 NA non-coding downstream 500926 19810468 ~ 19814211 (-)
G323327 NA non-coding downstream 712801 19602109 ~ 19602336 (-)
LOC117599978 NA non-coding upstream 55352 20370564 ~ 20376314 (-)
G323773 NA non-coding upstream 74029 20389241 ~ 20436040 (-)
G323781 NA non-coding upstream 102398 20417610 ~ 20442372 (-)
G323782 NA non-coding upstream 112894 20428106 ~ 20428391 (-)
G323775 NA non-coding upstream 129772 20444984 ~ 20446212 (-)
G323726 NA other downstream 119465 20195294 ~ 20195672 (-)
kdm4ab kdm4a,kdm4ab,LOC108280529,LOC107564389,LOC107684932,LOC107700543,LOC107551714,LOC107743373 other downstream 807940 19476112 ~ 19507197 (-)
G323011 rpl5,rpl5a,LOC102781853,LOC108436062,LOC101160347,LOC103149531,LOC106904255,LOC105920466,LOC106958298 other downstream 1237220 19075000 ~ 19077917 (-)
tceanc2 tceanc2 other downstream 1308758 19003239 ~ 19006379 (-)
mrpl37 mrpl37 other downstream 1320501 18985173 ~ 18994636 (-)
LOC113546371 NA other upstream 68989 20384201 ~ 20411806 (-)
LOC113546455 atr,LOC104958464,LOC107677746,LOC107700496,LOC107576458 other upstream 146803 20462015 ~ 20469569 (-)
sh3glb1b sh3glb1,LOC108280317,LOC107700566,LOC107677816,LOC107732941,LOC108414852,LOC107553268,LOC102780267,LOC107382675,LOC103377018 other upstream 351079 20666291 ~ 20714017 (-)
G323902 NA other upstream 512814 20828026 ~ 20830104 (-)
LOC113524960 LOC108280415 other upstream 630924 20946136 ~ 20976372 (-)

Expression


Co-expression Network