LOC117599937


Basic Information

Item Value
gene id LOC117599937
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 10517588 ~ 10520208 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004580283.1
agaaatcAAGTACCTGGTTTGACTGGATCAATAATGGAGAAGAACGCCAGATGACTACTGTAATTCTgagtattaaattatttttattatagaataatatttttgatttattttgacCTTGGAGAACACTGGGGCTTCTTATAGATCTCATGGCTGAGATGGCAATATGAATCATCTTGTTACTGAAGCGGCATTTAAAACCTCAGGTGATGATAAAACAAATTGAGGCCTTAAAGGCTGCAGAATCTACAGAAATCACAGGAGATTTTGTAATATGTGTAACATGAAAGAACTCAACAGAGATTGTGCTATGTGATGCAGGTGTAAAGAACAAGGAATCTTGGTAATGATGTTGCTGCTCATTACATGTCTGTAtgtcctcttcctctccttccctcttcCCTCTGGCTGGTTTTGTGGAACATTCAACGCTGTCGGGTTACAATCAACATTCATTGCTGTCGGTGGATTTTAGTTTGTGAAAGTCACTGAACAATGAGTGTAACTGTGCCTGAGTTTCCTGCCTCGCCATGGGAGAAAGAGACACACTACACATTCACCCTCTGGGTCCTGCCACcccctttttatttctgtaaggcTTGCTTcgttgttctctctctttattgCTCTTCCTCACAGATCTCAAGTTTTTAAGGGAGACACAAATAGAACCAAATGTGCTGCCTGCCTCATGGGATTAATTGGAGGTTGTGTGTGCAGACACGTTTGTGTCTAGCAGATGGAAGGAAGCGGAAGATGAATGTGTAATCATCTGGATGTTCTTCTCATTTAGCTGTTTTGTTACTTAAATTATATGCTGCACTCGCTGCAGGCCGGAATGGGCTTAAATACTGCATtttggatatgtgtgtgtgggggatgGGATCTGGATGAATGGTTTGCCAGTTCATGAATGTTTCCTTTTGCGTGTTCTTCACAGAACAAATCCCGGCCCTAACCATCAGTTTTCTGAATTATCTGGACACTAATGTGAAATGTTCCTCTCCTACTTATAAACACAGAAACCCATTGGGGTAAAGCAATGCAGCAAGTTGTTCAACAAAAACAATCAATTCAATATTAAGACAAAGAAATATTAGCTGATTTGCTCTCTGAAAATCTAAGGGAAATGCAAATCCAGAAGTAAATCACATGCCTGTCTGATGGGCACATTGGCCAAAGCGTGCtgattttaatgtattaatggaAACTGTGCTAAGAGCTGTGCTAACACCCTAGTAAAAATgagagcatttatttatttctgttatccTCTGGCTGTTGAATATTGATGGAAAAAGGTCATAACATTGTTATATAGTTTATTACACAAGACTCTTGTCTTCACCCCGTGTCTGTATGGATTTCTTTCCACCTCTGAAACTATGCCGGTAGGTGGAATGGCTACACTAAATTTCTGCTATGTGTGAATGATTCTGTAATGTTTGtgtctacataaacattttgtaAGTGAGATACTGTCTGCAAAAAATTTGCATtgtctaattatttatttgaatattttgtagTAACTTGAACACCTTTTGAAAATATTTGCTAGATCACTGAAATCTACGTTAGACACCTCTAATCCTAGAGCCACTTAACTTTTGCTTTTGAAGTACAACAAGCTGAGCAATGTAGAACTGCAACAACTAATCGACAAAATCGATAAAAATCAATGATAGAAATAGTTGGCAACGAATTTCATTATCATTTAGTTGAAATGTGTTATGAAGcacactaaaaacacatttgactGAAATGGCGGAGCAGGAAGAACAGTACAACTTTCTCTACGGTATGGAAACTTGCAGTACACTACCCTGCTGGCCTCATGACATAAGTTGTGTTTTAATGTGAGTGATATCATCATTCATTTGTGAGAATGTGAGAAACAGTGGAATCGTGATGTCCCTGCTTGAACCATCCGCCTTGTATTGAGTTTTCTGACCTTATTCGGTTTTCTGGCCGTATCACACATTTATGGTCATATGTCTAACTTTCCAAGTCtatcagaaaatattatttcactCTACTTTGGTCAAATCATGAATAGTTTGTATAAAAACTCGATGGGTTGAAAATGAACACGGCCTCAAATTAATAATTAGActgcaaaacaaatgttttatatataagacAAGCATCTTTGGAATATCCTGAACAAAGAAGTCCGATCcgtggaggccccacctcacaacctacaggacttaaaggatcttgtgctaacatcttggtgccagacacTACAGCACACCtacagaggtcttgtggagtccat

Function

GO:

id name namespace
GO:0005581 collagen trimer cellular_component

KEGG:

id description
ko04974 Protein digestion and absorption

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004580283.1 True 2284 lncRNA 0.38 3 10517588 10520208

Neighbor

gene id symbol gene type direction distance location
kirrel1b kirrelb,LOC108280344,LOC108428281,LOC107749112,LOC107659821,LOC107557870,LOC107721762 coding upstream 170200 10291830 ~ 10347388 (+)
cadm3 cadm3,LOC107749121,LOC107600075 coding upstream 229364 10196108 ~ 10288224 (+)
trnar-ucu_12 NA coding upstream 329764 10187751 ~ 10187824 (+)
sdhc sdhc coding upstream 331521 10173820 ~ 10186067 (+)
atp1a2a atp1a2a,LOC108261056,LOC108428278,LOC107692876,LOC107749099,LOC107721700 coding upstream 386866 10061226 ~ 10130722 (+)
ccl20a.4 NA coding downstream 12776 10532984 ~ 10534451 (+)
vwa5b2 LOC108280745 coding downstream 135201 10655409 ~ 10704492 (+)
mul1a LOC108280869 coding downstream 191500 10711708 ~ 10719149 (+)
ncapd2 ncapd2,LOC107692903,LOC107659972,LOC107749205,LOC107557881 coding downstream 318547 10838755 ~ 10860296 (+)
acsm3 acsm3,LOC108428295,LOC107749205,LOC107682913,LOC107735424 coding downstream 341751 10861959 ~ 10878656 (+)
G317939 NA non-coding upstream 7395 10504163 ~ 10510193 (+)
G317761 NA non-coding upstream 330462 10186306 ~ 10187126 (+)
G317754 NA non-coding upstream 360058 10157277 ~ 10157530 (+)
G317703 NA non-coding upstream 410667 10105766 ~ 10106921 (+)
G317633 NA non-coding upstream 577351 9939969 ~ 9940237 (+)
G317946 NA non-coding downstream 4278 10524486 ~ 10524774 (+)
G317963 NA non-coding downstream 54606 10574814 ~ 10575152 (+)
G317964 NA non-coding downstream 55105 10575313 ~ 10575547 (+)
G317967 NA non-coding downstream 61885 10582093 ~ 10582292 (+)
G318016 NA non-coding downstream 127713 10647921 ~ 10648193 (+)
pip4p1a tmem55b,tmem55ba,LOC106600488 other upstream 539672 9958993 ~ 9977916 (+)
G317390 NA other upstream 1102424 9412323 ~ 9415164 (+)
LOC117599964 LOC107387363,LOC107676291,LOC107756568 other upstream 1704178 8811595 ~ 8813410 (+)
G316745 NA other upstream 2248390 8268709 ~ 8269198 (+)
G316744 NA other upstream 2253527 8263339 ~ 8264061 (+)
capn10 capn10 other downstream 16223 10536431 ~ 10562994 (+)
eif4e2 eif4e2,LOC107600102,LOC107579667,LOC107749152,LOC107730458 other downstream 43613 10563821 ~ 10568907 (+)
camk2n1a camk2n2,camk2n1a,LOC107659987,LOC107600060,LOC107557885 other downstream 210138 10730346 ~ 10734088 (+)
per2 LOC108280459,LOC108439864 other downstream 879676 11399884 ~ 11464769 (+)
G318439 NA other downstream 947091 11467299 ~ 11469499 (+)

Expression


Co-expression Network