LOC117599942


Basic Information

Item Value
gene id LOC117599942
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 9904146 ~ 9944556 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004580288.1
TAAAACAAGTAGAAGAAGAATAGCGGtcgaagaagaagaacagcatgGAGGAACGTGAGAGAGATGGCGTTGGAGTATCCCAATGTTGACAGGCAAGTAATAAAGCAGGATTCCATGGAATAGCAGCTGAAGAGGATGGATGCTTCCAGAGTAGATGCAGACGACATTGTAGAGAAAATTTTACAGACCCAAGACTTCAGACATAGTATACTGGACTCCAGTGCTGAGgCATCCCTCCTGAGGAAACAATCTACAACCTCCCTCACATGTTTTTCCAAAGATTGCTGGACAGAATTCTGCAGCGTCTCCAAGCTAGCCTCCACTGCCTCCCTTAACACAGCTTCCCTATTAAGAGTGCTGTTAATCGATTGTTTATGATCTGTGTCTAGACTTCTGACTTATGTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004580288.1 True 405 lncRNA 0.44 3 9904146 9944556

Neighbor

gene id symbol gene type direction distance location
prpf38b prpf38b,LOC107660074,LOC107568745,LOC107730443,LOC103395982 coding downstream 9379 9874783 ~ 9894767 (-)
LOC113533399 LOC108280347 coding downstream 115493 9715945 ~ 9788653 (-)
zeb1a LOC108280338 coding downstream 218719 9651575 ~ 9685427 (-)
epc1b LOC108280341,LOC108442943 coding downstream 417952 9416189 ~ 9486194 (-)
ift57 ift57,LOC108280285 coding downstream 1146118 8726321 ~ 8758028 (-)
wdr47a wdr47,LOC108261062,LOC108428282,LOC107749106,LOC107730459 coding upstream 403285 10347841 ~ 10392507 (-)
camsap2b LOC108261060,LOC108428284 coding upstream 449327 10393883 ~ 10460626 (-)
LOC113533548 NA coding upstream 625629 10570185 ~ 10584166 (-)
chrng LOC108428254 coding upstream 639962 10584518 ~ 10596849 (-)
LOC113533461 prss56 coding upstream 657142 10601698 ~ 10607930 (-)
G317591 NA non-coding downstream 77104 9826815 ~ 9827042 (-)
G317588 NA non-coding downstream 82004 9821929 ~ 9822142 (-)
G317581 NA non-coding downstream 94731 9809202 ~ 9809415 (-)
G317580 NA non-coding downstream 95383 9808562 ~ 9808763 (-)
G317570 NA non-coding downstream 106086 9797830 ~ 9798060 (-)
G317656 NA non-coding upstream 12989 9957545 ~ 9958446 (-)
G317664 NA non-coding upstream 36441 9980997 ~ 9981262 (-)
G317669 LOC100537796 non-coding upstream 42246 9986802 ~ 9990215 (-)
G317685 NA non-coding upstream 63096 10007652 ~ 10009267 (-)
LOC113533396 NA non-coding upstream 70907 10015463 ~ 10018527 (-)
LOC113542985 crem,crema,LOC108439856,LOC100534480,LOC107659668,LOC107563815 other downstream 930871 8969204 ~ 8973275 (-)
pitrm1 pitrm1,LOC107698483,LOC107679400 other downstream 950036 8903824 ~ 8954110 (-)
G317176 NA other downstream 1018437 8883649 ~ 8885709 (-)
vcpip1 vcpip1 other downstream 1415517 8477223 ~ 8488629 (-)
rps28 rps28 other downstream 2336012 7565081 ~ 7568134 (-)
ccl20a.3 LOC108261059 other upstream 582726 10527282 ~ 10528279 (-)
wu:fb63a08 LOC108280878 other upstream 1675320 11619876 ~ 11705877 (-)
LOC113533649 LOC108280860,LOC108433106 other upstream 2963897 12908453 ~ 12928071 (-)
ccl25a NA other upstream 3667960 13612516 ~ 13615743 (-)
LOC113533556 LOC108280202 other upstream 3720625 13665181 ~ 13680110 (-)

Expression


Co-expression Network