LOC117599950


Basic Information

Item Value
gene id LOC117599950
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 9657902 ~ 9659672 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004580293.1
agtgcaaaactgtttgtagcaattgcagtcctaagccatcacagcaaaactgttcatagcaattcCAGCAATTCCTAAGCTATCTTTATGgcttctaagtggtaccatccacagtaatctcactgATTTTTAGGCTGTCCGTATGGGGCCATCTCCAGCAGCATCGAGTGATTTCCAGTTGAtcagaactccaaccagaaatggggcatcaggatggatcaggcaggtcctgaGAACAGAAGGAGTCAGAATCACAGagtgcaagcagggactctagCAAGACTAGCTCTGGCAGCATAACTTAAAGGGAGAGCCAAAAGTTAACACAGACATAAGGGCAAATgtctgggacataaagcagccagccactccactgtcaacattAACACCCTGGTGAAGAAGGCCTGTCAGCGTCTTTACCACCTTAGATGGTTAAGGGGCTTTAAACTTCCCTCTAAGGTGGTAAGGAGCTTCTACACCTCCACAAGCGGTAGCATCCTGATGggaagcatcacagcctggtttggAAACGGCACCAAGCAGGATAGGCGGGCTCTCCAGAGGGTGGTACGATCAGCTGagcacacaatacacactgagCTCCCTGGCCAGGAAGATAGTGAAGGACCTCAGTCATCTGAGCAATGGACTTTACTCTCTGTTGCGGTCAGGGAAGCGCTTCCACTCCCTAAAGGCCAACACaaaaagaaggaggaggagcttcttcccacaggccattCAGGCCCTCAACCAGGACAACACCTAGTAATTAGaccttggaatttttttttacacgataTCCACACCCCTTATGTTCCTACATTTAATATACCCatattattctgtatttataaatatttattatatatgttagcTTTTTCAATTCAGCTACCTTAGATTAACGTTGCACAGCATTGTATTGTACAtacaactgcacatatctgcactttatgaGGTCCAAtatcttttatattattattatttatttatttatttatttattctacttCTATGCTAGTAGATCCTGCCATCGGACAGTCACAAAAATCATTTCACAGCATGTCATACTTagtttggttttgtgtgtgaccagtaaaatttgaatttgaatttgaattttggaATTTGACTTTGATCCGCTGTTGTTTTTTCCAGAGAAGATCTAAGTGACTCACTCTGTGCTTTTAGCAATTTCTTGTTTCACCAGCCCTGTTTCTTCCTTAAAAATAACCTCCAAGTTATTTTAACCTTCCTTAAAATAACCTGGTCATTTTACAGCAGTATCAACTTACAGAGTGCCGTAGCTTCTTTTCACTTGTGAGAGCTTGTTTCTCTGCCTCCACTCTTTTTAGCCACTTCTTTAGAACATTAATTGTGGAAAAAATTGCTTGAAATTTCTTTCCTCAATTTGGGATCAGGATAGGGATCATCCATAGCATTCTCAATCTCATCGCACATTCCCTGTCAACCATGCTTGGTAATGTATTTAACAACCAGATCTGCCATTATTAAATGCTTACACAATACAGCAATTCAACTGTTTATGACTTCAGGTTACATAAAGCAGATATTGTAACTCAACGTATTTATTTGATGTGTTTTGAACAGAAATACAAACTTTTTACAAGTCAAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004580293.1 True 1634 lncRNA 0.40 2 9657902 9659672

Neighbor

gene id symbol gene type direction distance location
epc1b LOC108280341,LOC108442943 coding downstream 171708 9416189 ~ 9486194 (-)
ift57 ift57,LOC108280285 coding downstream 899874 8726321 ~ 8758028 (-)
tmem71 tmem71 coding downstream 943644 8690052 ~ 8714258 (-)
si:dkey-7l6.3 LOC108280163 coding downstream 969971 8678819 ~ 8687931 (-)
LOC113543001 LOC108280205,LOC108428270,LOC107749125,LOC107659567,LOC107602634 coding downstream 1105894 8505221 ~ 8552008 (-)
LOC113533399 LOC108280347 coding upstream 56273 9715945 ~ 9788653 (-)
prpf38b prpf38b,LOC107660074,LOC107568745,LOC107730443,LOC103395982 coding upstream 215111 9874783 ~ 9894767 (-)
LOC117599941 LOC107739197,LOC107573659 coding upstream 275551 9935223 ~ 9942312 (-)
wdr47a wdr47,LOC108261062,LOC108428282,LOC107749106,LOC107730459 coding upstream 688169 10347841 ~ 10392507 (-)
camsap2b LOC108261060,LOC108428284 coding upstream 734211 10393883 ~ 10460626 (-)
G317470 NA non-coding downstream 14991 9639372 ~ 9642911 (-)
G317428 NA non-coding downstream 157035 9500665 ~ 9500867 (-)
G317422 NA non-coding downstream 242773 9411315 ~ 9415129 (-)
LOC117599963 NA non-coding downstream 247959 9404384 ~ 9409943 (-)
G317370 NA non-coding downstream 425006 9232672 ~ 9232896 (-)
LOC117599991 NA non-coding upstream 37084 9696756 ~ 9699099 (-)
G317538 NA non-coding upstream 45759 9705431 ~ 9705970 (-)
G317543 NA non-coding upstream 53078 9712750 ~ 9712967 (-)
G317547 NA non-coding upstream 54688 9714360 ~ 9715838 (-)
G317568 NA non-coding upstream 135089 9794761 ~ 9794965 (-)
LOC113542985 crem,crema,LOC108439856,LOC100534480,LOC107659668,LOC107563815 other downstream 684627 8969204 ~ 8973275 (-)
pitrm1 pitrm1,LOC107698483,LOC107679400 other downstream 703792 8903824 ~ 8954110 (-)
G317176 NA other downstream 772193 8883649 ~ 8885709 (-)
vcpip1 vcpip1 other downstream 1169273 8477223 ~ 8488629 (-)
rps28 rps28 other downstream 2089768 7565081 ~ 7568134 (-)
ccl20a.3 LOC108261059 other upstream 867610 10527282 ~ 10528279 (-)
wu:fb63a08 LOC108280878 other upstream 1960204 11619876 ~ 11705877 (-)
LOC113533649 LOC108280860,LOC108433106 other upstream 3248781 12908453 ~ 12928071 (-)
ccl25a NA other upstream 3952844 13612516 ~ 13615743 (-)
LOC113533556 LOC108280202 other upstream 4005509 13665181 ~ 13680110 (-)

Expression


Co-expression Network