LOC117599954


Basic Information

Item Value
gene id LOC117599954
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 1089858 ~ 1104324 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004580295.1
tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcatgacttTTGGCTTCAGCATCAGTCCGACATCTTTATTAATGCAGTGGAGATGAATATGGAGCTGAGCTTCATGGCGCAGAGGAAGTGGCCTGTCTCCTCCGCTTTTTGTTCCGCgataatgagcgagccagatgCTGGAGTGTgaaagaggagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgaggaggagggacatcacaccacatcactcCTGTCCTTCATCTACACCATCAACACGTCAGGGAGTAAAACCTCTTCACCACCACATCACACCTCatcaGTGCAGAGATGATCCTCCTTCAGCGTCCACACCTGCGATCTGAAAGAACTCACACTGTTACTCTGAGCTTCGTCTTATAAAACTACATCTGTAAAAATCATGTGCAGTTTCCAAGTCCTGGTTGTAGGACACAGTTGGACTGTCGAGACCTTTCTGGAAGTTCAGCGTCCCGCTGCTCTGTCTACATCTGAACAACAAAAGGTGGAAGAAGAGGGCCTCATCAACACCTCGAGCGGCGCCATAATTAACCGACTCCTGAGGTGGATGATAACAGGCTCATGATCTCCGCAGAGTTTACGCTGCCTTCAAGTCAGAAATATCGTAATTATGAGGTGAGCGCAGTTGAATGACACGACAATGCCATAATTACGACTCAGGAACTCGTATCTGTCTATGAACAAGTTCGGGGGCGTGTCAATAACGAAAAGTCATGGCGGCTGCTCACATGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004580295.1 True 780 lncRNA 0.48 4 1089858 1104324

Neighbor

gene id symbol gene type direction distance location
cnpy1 cnpy1,LOC108435706 coding upstream 23391 1053868 ~ 1066467 (+)
shhb LOC108280234 coding upstream 77666 1003909 ~ 1012192 (+)
trpa1a LOC108280835,LOC108435699 coding upstream 124241 946792 ~ 965617 (+)
tmem70 tmem70 coding upstream 188234 898058 ~ 901624 (+)
rdh10b rdh10b,LOC108280502,LOC108435720,LOC107550714,LOC107664055 coding upstream 216092 868721 ~ 873766 (+)
cahz cahz coding downstream 246939 1351263 ~ 1357482 (+)
cdh6 LOC108280858,LOC108432255,LOC107678945,LOC107667294,LOC107567409 coding downstream 783426 1887750 ~ 1935629 (+)
zgc:163121 LOC108280641,LOC108432257 coding downstream 878992 1983316 ~ 2018166 (+)
LOC113543213 rnf31,LOC108432260 coding downstream 937876 2042200 ~ 2060017 (+)
xkr4 xkr4,zgc:123035,LOC107714844,LOC107728991,LOC107674319,LOC107679338 coding downstream 965037 2069361 ~ 2116180 (+)
LOC117599981 NA non-coding upstream 109807 976621 ~ 980051 (+)
G312540 NA non-coding upstream 183412 906234 ~ 906446 (+)
G312534 NA non-coding upstream 203744 883404 ~ 886114 (+)
G312531 NA non-coding upstream 213978 875663 ~ 875880 (+)
G312509 rpl7,LOC107664057,LOC107584398 non-coding upstream 223137 862387 ~ 866721 (+)
LOC117599969 NA non-coding downstream 259052 1363376 ~ 1370691 (+)
G312877 NA non-coding downstream 417977 1522301 ~ 1522511 (+)
LOC113543035 NA non-coding downstream 520239 1624563 ~ 1662193 (+)
G313016 NA non-coding downstream 790378 1894702 ~ 1894947 (+)
G313053 NA non-coding downstream 869775 1974099 ~ 1976715 (+)
jph1b jph1b,jph1,LOC108280498,LOC107550709,LOC108435725,LOC107584332,LOC107746914,LOC107686034,LOC107664083,LOC107732545 other upstream 242841 820530 ~ 847017 (+)
LOC113543349 iws1 other upstream 372567 704778 ~ 717291 (+)
atpv0e2 LOC108280382,LOC100691746,LOC107588449,LOC107551367,LOC107706116 other upstream 588469 413619 ~ 501389 (+)
snap91a snap91,LOC108280370 other upstream 770896 274822 ~ 318962 (+)
pnrc2 pnrc2 other upstream 896324 189539 ~ 193534 (+)
paxip1 paxip1,LOC106569237,LOC107550719 other downstream 24585 1128909 ~ 1147376 (+)
c21h5orf22 c20h5orf22,LOC107714825 other downstream 861416 1965740 ~ 1977309 (+)
tgs1 tgs1 other downstream 1028826 2133150 ~ 2145237 (+)
G313112 zswim5 other downstream 1077655 2181979 ~ 2185677 (+)
LOC117599997 LOC108280771,LOC108435500 other downstream 1550876 2655200 ~ 2662399 (+)

Expression


Co-expression Network