LOC117599962


Basic Information

Item Value
gene id LOC117599962
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 12761836 ~ 12763727 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004580306.1
CAAGAATCAAGGATATACTTGACTGGTACCCAGCTCCTGTTCTAAGGTCAATAACCTTCCCAGTCTACAAGgagTGCCCTTCGGACCGTTAACGTTCTGTGCTGCCTGTCGTGTTTGTCGATTTGGAGGAGTTCTCTATCCACAGAGCatgagcagtaagcaagaaaacaaaagagcaaatacCTGGTGTGATTACTATTAAATAATTAGAAACACCTCCATTCTGGCCCAACCAAAGAGATCTACTGGTTCACAAGTCCAAGGTTCATCTATTCACAAATTAAAATTCACCTAGATAAAGCTGACATGAAACAAATATAACTGCTACCAGAAATAAATGCATCTTTCTCATcccatgtcct
>XR_004580307.1
CAAGAATCAAGGATATACTTGACTGGTACCCAGCTCCTGTTCTAAGGTCAATAACCTTCCCAGTCTACAAGgagTGCCCTTCGGACCGTTAACGTTCTGTGCTGCCTGTCGTGTTTGTCGATTTGGAGGAGTTCTCTATCCACAGAGCGTAAGCATGAGAGTGCACAAAAATTGCATATTGCATCATTGAAacagtaatgaacatgactgacatctcaaacttaaacatatTTTTGGCAGTCAGACAAAGACCTGGAATCTGACACTGGTCAGTCAGTAGCCTAGCTAGCTGTCAGTGCCTTACTCAGTGAAatttaattagctaattagcagCTTAGCTGCTTTTTAGTGTGACATGGCAGAGACTACTCATTTTGTCAAACTGATTATGGAAAAGCCTTTGGATGCTCTCAAACAGGAGGCTAGACAAACAGATAAaatcgaacacacacacatatacaaataccAGCCACCACTGGTGGTAACATATAAAcgttatatgaaaaaaaaaaatataccagTGGGCTTGGTGTGGGTTCAATCTCTTAGCACCCTTCAAGAACTCTAAACTCCCTCCAGCCAGTGGCTCCTTTCCTCTAAAGCTAGCTTTATTGTGAGCAGTTCTTGATTCCCAGTGCCATAATCAGCAGGGGACAGTTGGTGTGAGAAATATGCGACCCCCAGTTTATTTATcgcattttattctttacttaaaatACCTTTATGGAAAGTCCCACACATGACCTCTGAGTCATAATGAAGTATAACCGCTAAAATAGGCACCACAAAATAGAGGAAGTCGAACTTTGGCCAGCAATAAACTTATTGATGCCTAACTTGTTTaacttaataattattttaataacattcTTCTTCTAatgaaatgtgttgtttatggttacaaatgattcatattttcataacaTCAATTTGGGGCTCTATTGTCCAGCCTATTTCCCATTAGTAAACTTATTAACACCGGTTCCTGTAATTCTCCACAGAAAGAGGGATATTTTAGAGACAGTTCCAAAGAAGCGAAACATGACTCAGTATTTTACAATCCTATGGCTATTACAATAACTTCCACTTTTCTCTTTGTTGTGTAAGCAACCTCACATTGTGTCAAATGTATGACGATAGATGTGTGAACTTCCAGTTCACAGTGTAGTAATTCCTGGTTTCTCTTACTGGCACCTCGATCTTCATAATAAAAGTAATGCTGGAAATTGGAGTCTGGGGCTGGAACCACGGGatgagcagtaagcaagaaaacaaaagagcaaatacCTGGTGTGATTACTATTAAATAATTAGAAACACCTCCATTCTGGCCCAACCAAAGAGATCTACTGGTTCACAAGTCCAAGGTTCATCTATTCACAAATTAAAATTCACCTAGATAAAGCTGACATGAAACAAATATAACTGCTACCAGAAATAAATGCATCTTTCTCATcccatgtcct

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004580306.1 False 362 lncRNA 0.41 3 12761836 12763727
XR_004580307.1 True 1466 lncRNA 0.39 3 12761836 12763727

Neighbor

gene id symbol gene type direction distance location
LOC113533522 NA coding upstream 333305 12416510 ~ 12428531 (+)
pax3a pax3a,LOC108280216,LOC108439877 coding upstream 1138991 11596699 ~ 11622845 (+)
trnag-ccc_6 NA coding upstream 1188939 11572827 ~ 11572897 (+)
trnai-aau_17 NA coding upstream 1212648 11549115 ~ 11549188 (+)
trnap-agg_14 NA coding upstream 1213657 11548108 ~ 11548179 (+)
LOC113533470 NA coding downstream 18810 12782537 ~ 12796824 (+)
LOC113533117 LOC108280188,LOC108433071 coding downstream 204587 12968314 ~ 12982849 (+)
abhd17aa abhd17aa,LOC108280794,LOC108433103,LOC105904035,LOC107757810,LOC107698472,LOC107599293,LOC107600230,LOC106584389 coding downstream 241067 13004794 ~ 13014554 (+)
rorcb rorcb,LOC108280913,LOC108433101,LOC107757806,LOC107698501 coding downstream 422204 13185931 ~ 13216057 (+)
sh3gl1a sh3g1,LOC108433099 coding downstream 453763 13217490 ~ 13241937 (+)
G319087 NA non-coding upstream 133946 12627675 ~ 12627890 (+)
LOC117599992 NA non-coding upstream 136082 12622299 ~ 12625754 (+)
LOC117599989 NA non-coding upstream 189429 12559513 ~ 12572407 (+)
G318725 NA non-coding upstream 689649 12063884 ~ 12072187 (+)
G318697 NA non-coding upstream 736393 12025208 ~ 12025443 (+)
G319198 NA non-coding downstream 41795 12805522 ~ 12805732 (+)
G319276 NA non-coding downstream 258600 13022327 ~ 13023135 (+)
G319286 NA non-coding downstream 273295 13037022 ~ 13037736 (+)
G319314 NA non-coding downstream 323536 13087263 ~ 13087475 (+)
G319318 NA non-coding downstream 338620 13102347 ~ 13102608 (+)
G318439 NA other upstream 1292337 11467299 ~ 11469499 (+)
per2 LOC108280459,LOC108439864 other upstream 1297067 11399884 ~ 11464769 (+)
camk2n1a camk2n2,camk2n1a,LOC107659987,LOC107600060,LOC107557885 other upstream 2027748 10730346 ~ 10734088 (+)
eif4e2 eif4e2,LOC107600102,LOC107579667,LOC107749152,LOC107730458 other upstream 2192929 10563821 ~ 10568907 (+)
capn10 capn10 other upstream 2198842 10536431 ~ 10562994 (+)
G319170 NA other downstream 1328 12765055 ~ 12803019 (+)
sema6ba si:ch211-168n16.1,LOC108280795,LOC108433102,LOC107713651,LOC107600229,LOC107757803,LOC107662975,LOC107698499,LOC105903857 other downstream 257415 13021142 ~ 13154527 (+)
LOC113533270 mtcl1 other downstream 1073706 13837433 ~ 13897914 (+)
zmp:0000000521 zmp:0000000521,LOC108280721,LOC107696078,LOC108442439,LOC107596226,LOC105888700 other downstream 1316522 14080249 ~ 14127012 (+)
rab31 rab31 other downstream 1622511 14386238 ~ 14466753 (+)

Expression


Co-expression Network