LOC117599967


Basic Information

Item Value
gene id LOC117599967
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 8898269 ~ 8899873 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004580314.1
CCAACACGAAAACACAGATCCCCACACCAGCACCAGAAAAAGGTCAGATCAGGGAATGTGAAACAGAAGTGGAAGAGAAACAGATGACCAGGAATGAGGTATGCAGACTAACCTCCAACAATGCATGTCAACAAGCAACCAGCAGCTAATCGGCCCAGATAAACAACAATTTTTTCTGCTGAATGAAGTGTATGGTTTGGTTGCATAGAGAAGTCAAAACTAGggaaacattttacattttgtaaatgtaattttgtaaAATGTGGATGTGTGCTGTAAATATCAAGGTGTCAGGGGTGTTGAATATGGGGACTGACACACTAACTGCACtgctgaaatgtaaataaacagtgtTACAGAAGCCAGTGGTACAATTTTGTGATTATAAATGCTCAAGAGTGGAAAGCAAGCTATGCAATTGTACAATACAGAGCACTAGAGtaattgacacacacacagctttctatttgtttgttgacattattttttgatgttttatat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004580314.1 True 501 lncRNA 0.38 3 8898269 8899873

Neighbor

gene id symbol gene type direction distance location
urb1 urb1 coding upstream 6311 8815766 ~ 8891958 (+)
cavin4a murc,murca,LOC107690354,LOC107749140,LOC107602614,LOC107721748 coding upstream 95359 8800697 ~ 8802910 (+)
med17 med17 coding upstream 111611 8757957 ~ 8786658 (+)
gtpbp4 gtpbp4,LOC107721733,LOC107749117,LOC107690210,LOC107659538 coding upstream 220175 8667284 ~ 8678094 (+)
slc39a6 slc39a6,LOC107749133 coding upstream 240670 8631553 ~ 8657599 (+)
LOC113543050 LOC108280424 coding downstream 109328 9009201 ~ 9027258 (+)
LOC113543049 LOC108280422 coding downstream 133696 9033569 ~ 9163194 (+)
LOC113543105 itgb1,LOC107659805,LOC107749113,LOC107690578,LOC107563813 coding downstream 268538 9168411 ~ 9219101 (+)
LOC113533645 arhgap12,LOC108280343 coding downstream 632804 9532677 ~ 9642644 (+)
LOC113533145 NA coding downstream 889124 9788997 ~ 9827888 (+)
G317136 NA non-coding upstream 76376 8820224 ~ 8821893 (+)
G317125 NA non-coding upstream 92544 8805270 ~ 8805725 (+)
G317113 NA non-coding upstream 104325 8793714 ~ 8793944 (+)
G317045 NA non-coding upstream 167451 8726341 ~ 8730818 (+)
G317031 NA non-coding upstream 206798 8689435 ~ 8691471 (+)
G317148 NA non-coding downstream 3317 8903190 ~ 8904069 (+)
G317139 NA non-coding downstream 38845 8938718 ~ 8942335 (+)
G317166 NA non-coding downstream 58564 8958437 ~ 8958651 (+)
G317200 NA non-coding downstream 70288 8970161 ~ 8973355 (+)
G317257 NA non-coding downstream 186971 9086844 ~ 9095548 (+)
LOC117599964 LOC107387363,LOC107676291,LOC107756568 other upstream 84859 8811595 ~ 8813410 (+)
G316745 NA other upstream 629071 8268709 ~ 8269198 (+)
G316744 NA other upstream 634208 8263339 ~ 8264061 (+)
fitm1 fitm1,LOC107688462,LOC107585187,LOC107722554,LOC107589905 other upstream 1141308 7751694 ~ 7756961 (+)
G316413 NA other upstream 1202350 7695534 ~ 7695919 (+)
G317390 NA other downstream 512450 9412323 ~ 9415164 (+)
pip4p1a tmem55b,tmem55ba,LOC106600488 other downstream 1059120 9958993 ~ 9977916 (+)
capn10 capn10 other downstream 1636558 10536431 ~ 10562994 (+)
eif4e2 eif4e2,LOC107600102,LOC107579667,LOC107749152,LOC107730458 other downstream 1663948 10563821 ~ 10568907 (+)
camk2n1a camk2n2,camk2n1a,LOC107659987,LOC107600060,LOC107557885 other downstream 1830473 10730346 ~ 10734088 (+)

Expression


Co-expression Network