LOC117599987


Basic Information

Item Value
gene id LOC117599987
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 19810468 ~ 19814211 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004580334.1
TTTGGCACAAGTCCTGCTTTGTAAAACTTAGAAAGAATGAGAGCGAGTCATTATCATGGATCATATCAACACTGATGGCAGTGATGGAAGTGAATCTGAGAATGGCACTGAAAGTGAGAATATGGATGTGTCTATGAGTGCACCAGTGCAGATTGCGATGCAGAAGGATCACCCACCAAAAGAAGCCAAAGCTGGATGTTCTGcagTGGTGCAGGACAATACTGTAGCAGAGACTGAACGCACTAGAAAGAGGTCTAGAAAGATG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004580334.1 True 265 lncRNA 0.44 4 19810468 19814211

Neighbor

gene id symbol gene type direction distance location
ptprfb ptprfb,LOC108280478 coding downstream 141573 19512722 ~ 19668895 (-)
st3gal3b LOC108280530 coding downstream 354053 19393253 ~ 19456415 (-)
LOC113546452 LOC108280527 coding downstream 426151 19364746 ~ 19384317 (-)
pif1 pif1,LOC107551719,LOC104945614,LOC107700539 coding downstream 479599 19316638 ~ 19330869 (-)
nsun4 nsun4 coding downstream 496794 19310150 ~ 19313674 (-)
pbx1a pbx1a,LOC103479586,LOC104918287,LOC103143038,LOC107083372,LOC103396165,LOC101069707,LOC108438878,LOC100704482,LOC108280905,LOC106929027,LOC107732204 coding upstream 94898 19909109 ~ 19985267 (-)
tmem275 LOC108280259 coding upstream 291761 20105972 ~ 20110891 (-)
kncn kncn,LOC107700491,LOC107710543 coding upstream 297159 20111370 ~ 20121708 (-)
cdc20 cdc20,LOC107732200,LOC107553255,LOC107700550,LOC107563294,LOC107710546,LOC107677877 coding upstream 336806 20151017 ~ 20157238 (-)
zfyve9a zfyve9,LOC108280307 coding upstream 371827 20186038 ~ 20211147 (-)
G323327 NA non-coding downstream 208132 19602109 ~ 19602336 (-)
G323308 NA non-coding downstream 316738 19438223 ~ 19493730 (-)
G323303 NA non-coding downstream 419111 19391157 ~ 19391357 (-)
G323298 NA non-coding downstream 424036 19386231 ~ 19386432 (-)
G323092 NA non-coding downstream 494998 19314511 ~ 19315470 (-)
LOC117599996 NA non-coding upstream 1003 19815214 ~ 19817065 (-)
G323706 NA non-coding upstream 307559 20121770 ~ 20180561 (-)
G323709 NA non-coding upstream 315042 20129253 ~ 20185132 (-)
LOC117599978 NA non-coding upstream 556353 20370564 ~ 20376314 (-)
G323773 NA non-coding upstream 575030 20389241 ~ 20436040 (-)
kdm4ab kdm4a,kdm4ab,LOC108280529,LOC107564389,LOC107684932,LOC107700543,LOC107551714,LOC107743373 other downstream 303271 19476112 ~ 19507197 (-)
G323011 rpl5,rpl5a,LOC102781853,LOC108436062,LOC101160347,LOC103149531,LOC106904255,LOC105920466,LOC106958298 other downstream 732551 19075000 ~ 19077917 (-)
tceanc2 tceanc2 other downstream 804089 19003239 ~ 19006379 (-)
mrpl37 mrpl37 other downstream 815832 18985173 ~ 18994636 (-)
G322826 NA other downstream 1054875 18753772 ~ 18755593 (-)
G323726 NA other upstream 381083 20195294 ~ 20195672 (-)
LOC113546371 NA other upstream 569990 20384201 ~ 20411806 (-)
LOC113546455 atr,LOC104958464,LOC107677746,LOC107700496,LOC107576458 other upstream 647804 20462015 ~ 20469569 (-)
sh3glb1b sh3glb1,LOC108280317,LOC107700566,LOC107677816,LOC107732941,LOC108414852,LOC107553268,LOC102780267,LOC107382675,LOC103377018 other upstream 852080 20666291 ~ 20714017 (-)
G323902 NA other upstream 1013815 20828026 ~ 20830104 (-)

Expression


Co-expression Network