LOC117599988


Basic Information

Item Value
gene id LOC117599988
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 21024172 ~ 21024556 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004580335.1
ATTAGCATGAGCTCGGTCAAAGGGATTGATGTGGGATCAGGTGTGTGGGATCAGGTGTGAGATCAGTCAGGGACTGATGTGGGATCAGGTGTGAGGGATCAGGTGTGTGGGATCAGGTGTGTGGGATCAGGCGGGGACTGATGTGGGATCAGGTGTGGGATCAGGTGTGAGATCAGTCAGGAACTGATGTGGGATCAGGTGTGTGGGATCAGGTGTGTGGGATCAGGTGTGTGGGATCAGGTGTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004580335.1 True 245 lncRNA 0.55 3 21024172 21024556

Neighbor

gene id symbol gene type direction distance location
LOC113524959 LOC108280417 coding upstream 32568 20980749 ~ 20991604 (+)
trnap-ugg_22 NA coding upstream 108697 20915404 ~ 20915475 (+)
tecrl2b LOC108280320 coding upstream 131175 20886260 ~ 20892997 (+)
col11a1b col11a1b,LOC107594685,LOC107680048,LOC107700498,LOC107564536,LOC107710593,LOC104931259 coding upstream 140566 20807627 ~ 20883606 (+)
amer3 amer3 coding upstream 421641 20592866 ~ 20602531 (+)
LOC117595742 LOC108280410 coding downstream 101317 21125873 ~ 21127829 (+)
G323624 NA non-coding upstream 94 20967513 ~ 21024078 (+)
G323603 NA non-coding upstream 78093 20933232 ~ 20946079 (+)
G323578 NA non-coding upstream 318978 20672934 ~ 20705194 (+)
G323577 NA non-coding upstream 351718 20671728 ~ 20672454 (+)
G323576 NA non-coding upstream 354012 20669685 ~ 20670160 (+)
G323625 NA non-coding downstream 1865 21026421 ~ 21037720 (+)
G323643 NA non-coding downstream 2269 21026825 ~ 21089934 (+)
G323644 actn4,LOC108261236,LOC108440922,LOC107737420 non-coding downstream 8322 21032878 ~ 21042418 (+)
G323646 NA non-coding downstream 10469 21035025 ~ 21043991 (+)
G323647 NA non-coding downstream 11738 21036294 ~ 21045332 (+)
arhgef4 arhgef4,LOC107700563,LOC107710620,LOC107732940 other upstream 360353 20637584 ~ 20663819 (+)
G323534 NA other upstream 583611 20438702 ~ 20440561 (+)
clcn2a clcn2a,clcn2,LOC108280323,LOC107710554,LOC107732945 other upstream 743105 20129253 ~ 20281067 (+)
LOC113546339 NA other upstream 1707966 19313860 ~ 19316206 (+)
gng12a gbg12,gng12a,gng12,LOC107705318,LOC107700509,LOC105895117 other upstream 1803943 19204658 ~ 19220229 (+)

Expression


Co-expression Network