LOC117599989


Basic Information

Item Value
gene id LOC117599989
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 12559513 ~ 12572407 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004580336.1
ttagcttagcctgttagctagctagctagtcgtgtgagtgagagagagagggagagagagacagacgttGCTAAAGTTCGGTGCTGTGCCTCAAGATGCCCGCGATGTTGGAAAAGGGTACGACggagatttcagggaaaagaagaggcagaaactcgCTCATGGCTAGATCTGCCTGGCAGATGTAGGGTAAGCAAGGGCGGATATTACAGCCAAGCACAGTAATCTTCCTTCTGCTTTCGTCTGAGCTGGGTGAGCCCTCAAGTCTCGGCCAACCAAACACAGAGCCTGCCCATAAAGTAAGAAGAAGTCACGTCAGGATTAGGTTGGATCACTGCTGTGAACAACTGAGAACTCCAGATGATGCGTAACAGCGAGCCGTTCAAGTGCCAAGGATTTGCGTTACAGCTGGACACTGCTACTGGCCTTGCAATCCACCCTGATGAACTCCTTGCTGACAGAATCAAGCATGTTGCCAGTCAAGCCTCAGTCACCACCAAGAAGGAGACATGGCTCACTACTAAGCCAGGCAAATCGGCAACTGACCACCTCTGAACATCAGTATCACCTGGAAGGTAATCTTATTTCTCAGTGCATGATCCAACACTTTCCAAGAAAGGCTCTTCCTATAAGACAGCTTGTGATGAGGTGAACTGGTGAGTACATTCCTTGCACATGTCCTTACCATAAAATCATTTTCCTGTTCTATTCCACTATGTTTTTCCTTTCAATGCTAATTGATAATGATGCAGCTGTAAACTTCGTAGATTTTAACACAGTCTAATGTACAGCCTTGAAAACCGCATTCCACAAGCTCTGGATGGAAAACCAGTAATCATCATCCATTAAACTGTCCCAATACACACTGACAACTGTGCTGTGCCCTCCTTATCAATGAATCTCCTAAGTACCCTATTGTTTTGGGATTGCCATAGCTGCAGACTCATAAACCAAGAATCTCCTGGCCAGAATACAAAATTATAGCCTGGTATCTCCAATCTCCCCAGTGCCTGAAACCTGATCAGGACACTATGAAACTTTGGTAATTCCACATAGCCTGGTCAGCAAGTCCTCTGTGTTACAAGCATTTGTCCAAAGTACCCAGGGATTTGCCCAAAGTACCAGTGTTCCactgtgtttttcctttcagtGCTCATTGATAATGATGCAGCTATAAACTTCATAGATCTTAACACTGTCTAACGTACAGCCCTTGTAAACTCCAGTCCACATTCCACAAGCTCTGGATGGAAAACTAGGTGTTATCATCTATCAAACTGTCCCAATACACACTGACAGCTGTGCTGTGCCCTCCTTATCAATGAATCTCCTAAATACCCCATTGTTTTGGGATTGCCATAGCTGCAGACCCATAAACCAAGAATCTCCTGGCCAGAACACAAAATTATAGCCTGGTCTCTCCAATCTCCCCAGTGCCTGAAACCTGATCAGATCAGGACACTATGAATCTTTGGTAATTCCATATGGCCTGGTCAGCAAGTCCTCTTTGTTACAGGCATTTGTCCAAAGTACCCAGAATGCTACCCACTTCCAGTTCCTAAATGCTTCTGGTCCCATGTTGCCACTGATGTTGTCACAGACATGTCCTTTTCCCAGGACATGACATCCATTTTAGTTGTTGTTGACAGTTTTTCAAAATCCCTTAGACTTACATCTGTCACTGACACACAGCTTTTGAAACTGCTGAACTACtatttaaattatgtattttgGTATCTCGAGGGTATAGTATCTGTGACATCCCATGAGACAAATATGCACAAAAGTTGGACGGTCAAGCCGCAACACAGCTCACACCCTGTCAATGTGTGCTCAGCTATCAACCTCCCCTATTCCCCTGGAATGCCATGCCCATCAATGCACCTGCTGGACGAATAGTTCAAGAAAAATAAAGGCACATGGCTGAAGGCCCCAGATGCCTGTCCATGAAAGATCTCTGTCCATTTGGAGGTGCACTTCTCTCTGCCTGTTGTGACAAGGACACACAACATTACTACCAGTCTCGACAAATTTACTGTGAACATAGGAGACAAAGAAATAGCTGATATAAATGAGAACACATAAAAATTGCTGATATAAATGAGAAAACAAGAATACATAAAATGCATTTGTTGGGAATTCTGAAAGTGAAATCTAATTGTAACTTCTTATGACAGTGTCACTGTTTGCATGCACACTCctgacaatatatttttttctgactcGGCTCCCTTTTTGCCACCCTTATCCAGCTTATTGCCTGCACTAATGGATGCAAAAATACATATACAGCATGTGGAAACATATGGACTGATGTTTGGAACATCGGTCACTGCACTATGTGTTTATGTTCAAATTAATAGTTGAgaatatttacagtacatacagtaataCCAATAATGCACTAATACATTTGACAAGGACCCATTGCAATGAAATAGTTGCCTATTGATGGCGAGACGTTAGCAATAGCGTTGGTATTCAAAGGAATGTGACTAAGCTGTCACAGAAATTAATCATGTATTCTGCAAATAAACCATGTAGTTTcaggatgaaaataaaatcGACCTTTTTCTCCTCAAACAAGGAGTGAAAGAAAACACAGGTGTCTTGCTGGTGTGTGTAACAGTGGCAGGTATGGAGAAAAGAAGGATGTCATGCAGGGAGACAGACAagttcataaacacacacagctgccacTTCCTGTGATGCTAAAGTCTGACACTGATGTAGTCTGGCTGCCACCAGAGCCAGCTGTCACGtctcacactccacactcactttcacactgtctcacacagagagagagagagagagagagagagagagagatacagagatacagagatacagATAGACATAGGATTTGTGTCACTTCAACCTGGTAATGTGAACATAGCTTAATTTAGCCATTAATGAATTAACAAACAGTTTACTGAAAAAATTCCTATGCAAGTTGGGACACTAACCTAATTCACTGTGTAATGaatctttttgtgtttgtttctaaaTTACCTTGGAACAACTTTGTTTAGTGAAGATAAAAAGCTCCACAGAGCCTAGATGAGGAATTTCTTCATTTGTCACCTGGAAAACTGTGTTCTCAGGCTAAGAATGTTTATCTTTTGCCCTAGTCCAATCTGCTAGTCGGCACATTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004580336.1 True 3158 lncRNA 0.43 3 12559513 12572407

Neighbor

gene id symbol gene type direction distance location
LOC113533522 NA coding upstream 130982 12416510 ~ 12428531 (+)
pax3a pax3a,LOC108280216,LOC108439877 coding upstream 936668 11596699 ~ 11622845 (+)
trnag-ccc_6 NA coding upstream 986616 11572827 ~ 11572897 (+)
trnai-aau_17 NA coding upstream 1010325 11549115 ~ 11549188 (+)
trnap-agg_14 NA coding upstream 1011334 11548108 ~ 11548179 (+)
LOC113533470 NA coding downstream 210130 12782537 ~ 12796824 (+)
LOC113533117 LOC108280188,LOC108433071 coding downstream 395907 12968314 ~ 12982849 (+)
abhd17aa abhd17aa,LOC108280794,LOC108433103,LOC105904035,LOC107757810,LOC107698472,LOC107599293,LOC107600230,LOC106584389 coding downstream 432387 13004794 ~ 13014554 (+)
rorcb rorcb,LOC108280913,LOC108433101,LOC107757806,LOC107698501 coding downstream 613524 13185931 ~ 13216057 (+)
sh3gl1a sh3g1,LOC108433099 coding downstream 645083 13217490 ~ 13241937 (+)
G318725 NA non-coding upstream 487326 12063884 ~ 12072187 (+)
G318697 NA non-coding upstream 534070 12025208 ~ 12025443 (+)
G318683 NA non-coding upstream 688547 11870767 ~ 11870966 (+)
LOC117599957 NA non-coding upstream 713102 11833308 ~ 11846411 (+)
G318658 NA non-coding upstream 760332 11798958 ~ 11799181 (+)
LOC117599992 NA non-coding downstream 49892 12622299 ~ 12625754 (+)
G319087 NA non-coding downstream 55268 12627675 ~ 12627890 (+)
LOC117599962 NA non-coding downstream 189429 12761836 ~ 12763727 (+)
G319198 NA non-coding downstream 233115 12805522 ~ 12805732 (+)
G319276 NA non-coding downstream 449920 13022327 ~ 13023135 (+)
G318439 NA other upstream 1090014 11467299 ~ 11469499 (+)
per2 LOC108280459,LOC108439864 other upstream 1094744 11399884 ~ 11464769 (+)
camk2n1a camk2n2,camk2n1a,LOC107659987,LOC107600060,LOC107557885 other upstream 1825425 10730346 ~ 10734088 (+)
eif4e2 eif4e2,LOC107600102,LOC107579667,LOC107749152,LOC107730458 other upstream 1990606 10563821 ~ 10568907 (+)
capn10 capn10 other upstream 1996519 10536431 ~ 10562994 (+)
G319170 NA other downstream 192648 12765055 ~ 12803019 (+)
sema6ba si:ch211-168n16.1,LOC108280795,LOC108433102,LOC107713651,LOC107600229,LOC107757803,LOC107662975,LOC107698499,LOC105903857 other downstream 448735 13021142 ~ 13154527 (+)
LOC113533270 mtcl1 other downstream 1265026 13837433 ~ 13897914 (+)
zmp:0000000521 zmp:0000000521,LOC108280721,LOC107696078,LOC108442439,LOC107596226,LOC105888700 other downstream 1507842 14080249 ~ 14127012 (+)
rab31 rab31 other downstream 1813831 14386238 ~ 14466753 (+)

Expression


Co-expression Network