LOC117599991


Basic Information

Item Value
gene id LOC117599991
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 9696756 ~ 9699099 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004580337.1
CTTTCGCCGTCTCTTTCCGGTGTTGTGACTCTGGAACGCCATAGTGAGGGAGGTAACCCTCGATATGAGAGTGTGAGCACGTGAGTTGCTGATGCGGTTATTTTGGAGACTGGGGACTCGGCATTTAGCCTTGAGCAACGAGCCGTGTTACACAGCGGTTTTATTCCACTCTGTTATAAAGTTGCTTTCCACTCTTGGATTATGCCAGAGAAAACTTGTAGAGGGAGAAGTAAAGGATTGTAGCAAATCATAAATTATAGGTAATGCCTTTTTACTTCCTTTACACCAATCAAGACACTTATCAATAATTGAGTGTGATATATTATCCAATGAAGGTGTGTGAGCACGTATATAATTCCTAATCTgtagaaatctaaaaaaatgaCTCTTGGGGAATTTAAATTTCTGTTGCAGCTGATTAAAAGATGCCAAAGCCCCCATAGTGAAAATATTGATGTGGATTGTGTGTTTCTTTAGAGTTTACGACGCCGTGTTGCATTTGCTTCAcggcaagtgttttatttgtcaatgttttgtattttatttgtatcttATACTAGTTGAGTTTGTTAAAggtatttttgcatttatgtttgtttttatttgacagATCTTTCCTTTTGGAGCTCTATGCATATGGACTTCTGATGTCTAGGCcctgctgttttgtttatgaTTCGATTTTGTCATTCAGTTTCTCAGTTTATGGTTATATGTTGATTCTGGTATTGCAGTaaattttgttgtttatttctgtaattgaCTTTGTTAGCTGAGTGTATTTTATGCCAACCGCTGAGGTTTGTTATGTGTTATGTAAAGGGgagtttttaaatccatttctcTGTTTTAGGAACCAGTCTGCATGGAAGTGCTTTCCTCTGGGGTCGTCCGGGTTTTCTTCTCCTCACTGCATGGTGGCGTGAGATTTCCTGCACTGCATGCTTATTGATTTGAGAGTGTAGagttatttgcattatttactACACCTTTTTATGCTGTTGGTTAATGATTTGTACATCAGtgcatgtgtggtgtgtgcttTAAGGCTGTGAGTCTGTGGCCCTGTGACTTTCCCCTTTCTTCCTGCAGGCTTGGTGAATCCTATATTGTAAGAATGGTGGgttatgattttaatatttggcCTACAGCTTTCTTAAAATTGTGAttccagttttaaaaaaaaaagcacaataaagTTGATTGCCTATCTAGAGATTTTATACTGCTTGTTAATAAAAGTGTTGAACTTGAAGGTCACGTCTCTGTTCCCTTTTTTATTCACTGGCAATGGAACTTGCTGTGTTAACTTATTTCCATGGGTACAAACCCCAGTGGCATAGTCGGAATCTAGAGTGACTTTTGGGTATCACTTGGTTACAATAAGCTTGAATGACTTCATGTGACTT
>XR_004580338.1
CTTTCGCCGTCTCTTTCCGGTGTTGTGACTCTGGAACGCCATAGTGAGGGAGGTAACCCTCGATATGAGAGTGTGAGCACGTGAGTTGCTGATGCGGTTATTTTGGAGACTGGGGACTCGGCATTTAGCCTTGAGCAACGAGCCGTGTTACACAGCGGTTTTATTCCACTCTGTTATAAAGTTGCTTTCCACTCTTGGATTATGCCAGAGAAAACTTGTAGAGGGAGAAGTAAAGGATTGTAGCAAATCATAAATTATAGATCTTTCCTTTTGGAGCTCTATGCATATGGACTTCTGATGTCTAGGCcctgctgttttgtttatgaTTCGATTTTGTCATTCAGTTTCTCAGTTTATGGTTATATGTTGATTCTGGTATTGCAGTaaattttgttgtttatttctgtaattgaCTTTGTTAGCTGAGTGTATTTTATGCCAACCGCTGAGGTTTGTTATGTGTTATGTAAAGGGgagtttttaaatccatttctcTGTTTTAGGAACCAGTCTGCATGGAAGTGCTTTCCTCTGGGGTCGTCCGGGTTTTCTTCTCCTCACTGCATGGTGGCGTGAGATTTCCTGCACTGCATGCTTATTGATTTGAGAGTGTAGagttatttgcattatttactACACCTTTTTATGCTGTTGGTTAATGATTTGTACATCAGtgcatgtgtggtgtgtgcttTAAGGCTGTGAGTCTGTGGCCCTGTGACTTTCCCCTTTCTTCCTGCAGGCTTGGTGAATCCTATATTGTAAGAATGGTGGgttatgattttaatatttggcCTACAGCTTTCTTAAAATTGTGAttccagttttaaaaaaaaaagcacaataaagTTGATTGCCTATCTAGAGATTTTATACTGCTTGTTAATAAAAGTGTTGAACTTGAAGGTCACGTCTCTGTTCCCTTTTTTATTCACTGGCAATGGAACTTGCTGTGTTAACTTATTTCCATGGGTACAAACCCCAGTGGCATAGTCGGAATCTAGAGTGACTTTTGGGTATCACTTGGTTACAATAAGCTTGAATGACTTCATGTGACTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004580337.1 True 1409 lncRNA 0.38 3 9696756 9699099
XR_004580338.1 False 1059 lncRNA 0.40 4 9696756 9699099

Neighbor

gene id symbol gene type direction distance location
zeb1a LOC108280338 coding downstream 11329 9651575 ~ 9685427 (-)
epc1b LOC108280341,LOC108442943 coding downstream 210562 9416189 ~ 9486194 (-)
ift57 ift57,LOC108280285 coding downstream 938728 8726321 ~ 8758028 (-)
tmem71 tmem71 coding downstream 982498 8690052 ~ 8714258 (-)
si:dkey-7l6.3 LOC108280163 coding downstream 1008825 8678819 ~ 8687931 (-)
LOC113533399 LOC108280347 coding upstream 16846 9715945 ~ 9788653 (-)
prpf38b prpf38b,LOC107660074,LOC107568745,LOC107730443,LOC103395982 coding upstream 175684 9874783 ~ 9894767 (-)
LOC117599941 LOC107739197,LOC107573659 coding upstream 236124 9935223 ~ 9942312 (-)
wdr47a wdr47,LOC108261062,LOC108428282,LOC107749106,LOC107730459 coding upstream 648742 10347841 ~ 10392507 (-)
camsap2b LOC108261060,LOC108428284 coding upstream 694784 10393883 ~ 10460626 (-)
LOC117599950 NA non-coding downstream 37084 9657902 ~ 9659672 (-)
G317470 NA non-coding downstream 53845 9639372 ~ 9642911 (-)
G317428 NA non-coding downstream 195889 9500665 ~ 9500867 (-)
G317422 NA non-coding downstream 281627 9411315 ~ 9415129 (-)
LOC117599963 NA non-coding downstream 286813 9404384 ~ 9409943 (-)
G317538 NA non-coding upstream 6332 9705431 ~ 9705970 (-)
G317543 NA non-coding upstream 13651 9712750 ~ 9712967 (-)
G317547 NA non-coding upstream 15261 9714360 ~ 9715838 (-)
G317568 NA non-coding upstream 95662 9794761 ~ 9794965 (-)
G317570 NA non-coding upstream 98731 9797830 ~ 9798060 (-)
LOC113542985 crem,crema,LOC108439856,LOC100534480,LOC107659668,LOC107563815 other downstream 723481 8969204 ~ 8973275 (-)
pitrm1 pitrm1,LOC107698483,LOC107679400 other downstream 742646 8903824 ~ 8954110 (-)
G317176 NA other downstream 811047 8883649 ~ 8885709 (-)
vcpip1 vcpip1 other downstream 1208127 8477223 ~ 8488629 (-)
rps28 rps28 other downstream 2128622 7565081 ~ 7568134 (-)
ccl20a.3 LOC108261059 other upstream 828183 10527282 ~ 10528279 (-)
wu:fb63a08 LOC108280878 other upstream 1920777 11619876 ~ 11705877 (-)
LOC113533649 LOC108280860,LOC108433106 other upstream 3209354 12908453 ~ 12928071 (-)
ccl25a NA other upstream 3913417 13612516 ~ 13615743 (-)
LOC113533556 LOC108280202 other upstream 3966082 13665181 ~ 13680110 (-)

Expression


Co-expression Network