LOC117599993


Basic Information

Item Value
gene id LOC117599993
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 7648704 ~ 7650020 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004580345.1
attctgtatttttctctgtattttgcAAGCACTTCAACACGATTGTGGGCAACAACCTCAAGCAGGAATTCTATGAAAGCATAGATCTGCACAGTCTTCGTCTTATTGAGATAATTCAATACTAAAGAGCCAACTGATATTTGGTTACTGTTGGTCAGAGGGCTTCCTATTGTCCTTGAAGACAACCCCACAGACTTCTACAAAGCATGCTTTGACTCCGATGACGATGACTCATTCTGCCATCTTGACGTTGGGATCCTCCTCATTAATCATGAAGGTGCTGTGCTCTCATCTTCCCTCCATCTCAGTCCAGCCTCATTGAAGATCTTCATTGAGGCAGAAGTTGTGATGGACAACATTCAAGACTTGCCAAAAGCCATGTGCATTCTGTTTGGACTTGCATATGCACTGCATCACAATTACCCCAAATCTATGAAGAacacattccagttcatccaacaGGTACTTCTCACAGTACACAGTAAACTAAAACCCAGGTTACAAACACTGAAAGCTTGCAATTTAAAGGCATGCTATGACAAGTCTGTGAGAAGCCATGGcagcttttgttttttccacagCACACCATGCAGCTGCAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004580345.1 True 599 lncRNA 0.43 3 7648704 7650020

Neighbor

gene id symbol gene type direction distance location
trnau1apb tsp1l,LOC108428349,LOC107680226,LOC107589802,LOC107718075,LOC107722553,LOC107688461,LOC107585172 coding upstream 35920 7603361 ~ 7612784 (+)
LOC113543252 LOC108280221 coding upstream 73324 7568121 ~ 7575380 (+)
foxl2a foxl2 coding upstream 93779 7553561 ~ 7554925 (+)
rbp2a ret2,rbp2,LOC103044214,LOC108410483,LOC108239352 coding upstream 144007 7500421 ~ 7504697 (+)
LOC117595729 NA coding upstream 154885 7489370 ~ 7493819 (+)
lrrc6 lrrc6,LOC108280282 coding downstream 209004 7859024 ~ 7881717 (+)
kcnq3 kcnq3,LOC107749193 coding downstream 233875 7883895 ~ 7935093 (+)
LOC113543381 hhla1 coding downstream 291058 7941078 ~ 7953336 (+)
oc90 NA coding downstream 307023 7957043 ~ 7973996 (+)
adcy8 adcy8,LOC107569488,LOC107557810,LOC107659784,LOC107663336 coding downstream 420545 8070565 ~ 8130482 (+)
G316339 NA non-coding upstream 80636 7565086 ~ 7568068 (+)
G316317 NA non-coding upstream 143300 7505079 ~ 7505404 (+)
G316288 NA non-coding upstream 215280 7426461 ~ 7433424 (+)
G316000 NA non-coding upstream 518827 7127691 ~ 7129877 (+)
G315968 NA non-coding upstream 614898 7033565 ~ 7033806 (+)
G316396 NA non-coding downstream 20311 7670331 ~ 7670559 (+)
G316397 NA non-coding downstream 21270 7671290 ~ 7671520 (+)
G316398 NA non-coding downstream 21552 7671572 ~ 7671859 (+)
G316405 NA non-coding downstream 39357 7689377 ~ 7689965 (+)
G316419 NA non-coding downstream 53702 7703722 ~ 7729737 (+)
crsp7 LOC108280732 other upstream 50540 7582313 ~ 7598164 (+)
G316001 NA other upstream 513203 7133459 ~ 7135501 (+)
LOC113543138 LOC108280551,LOC108414043,LOC105006373 other upstream 703714 6937340 ~ 6944990 (+)
G315581 cldnj,LOC108280332,LOC108424024,LOC107749063,LOC107680085,LOC107551261,LOC107703975 other upstream 1421464 6226717 ~ 6227240 (+)
shox2 shox2,LOC107720426,LOC107598669,LOC107703017,LOC107709009,LOC107661335 other upstream 1747138 5894504 ~ 5901566 (+)
G316413 NA other downstream 45514 7695534 ~ 7695919 (+)
fitm1 fitm1,LOC107688462,LOC107585187,LOC107722554,LOC107589905 other downstream 101674 7751694 ~ 7756961 (+)
G316744 NA other downstream 613319 8263339 ~ 8264061 (+)
G316745 NA other downstream 618689 8268709 ~ 8269198 (+)
LOC117599964 LOC107387363,LOC107676291,LOC107756568 other downstream 1161575 8811595 ~ 8813410 (+)

Expression


Co-expression Network