LOC117599995


Basic Information

Item Value
gene id LOC117599995
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 11629570 ~ 11631921 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004580347.1
CGGATCAGCTGCCCCCCGCCGCGCCACCGTCAACCAGTGAACTCCACCGCGCTTGATTTGATACGTCTATGAAAGGAGATACCGCTACCTTGGGACGGGACGGGGGGAGTTGTCGAacaaaataatctaaaaaagaagaagaagaagaagaagaagaagaagaagaaccaaACTGTCAAACATAGATTCCTCTGAAAAGGGAAGCACCCAAGACTGAATATAgacaaatattttacttttcaatGTTTCGTGTATTAATGAGATTCAgcaaaaaaattgtgatttttactTTATATGAGATTTCTTAAATTATCATGTcacaaaataaagtttaattttggTAAGAACAAATGTTACTTCATCATGCATTACATGATTTACAAGTTGGTAAACATTAgagctaaaataacaatgtcTGCATATGTGACTAATACACATGAATTTTGTCCTCAATCCTACATCGTCATTGTTTCCTTTAAAGACGAGGACTCCTTAGGAAAAGCTTCATCGAAACTGGACAGATCTACAGTGAGGTCATTCCTGAGAAAGTGGGGTTGTTGTCATACAAAACCCCTCATTCAGTAAAGACGGATGCCACATCATGTGAAGTATTTGTGCTAaaagtttttattgtttgtaaTATTGGTCTGTAA
>XR_004580348.1
TGCCCCCCGCCGCGCCACCGTCAACCAGTGAACTCCACCGCGCTTGATTTGATACGTCTATGAAAGGAGATACCGCTACCTTGGGACGGGACGGGGGGAGTGTAGTGTCGAacaaaataatctaaaaaagaagaagaagaagaagaagaagaagaagaagaaccaaACTGTCAAACATAGATTCCTCTGAAAAGGGAAGCACCCAAGACTGAATATAgacaaatattttacttttcaatGTTTCGTGTATTAATGAGATTCAgcaaaaaaattgtgatttttactTTATATGAGATTTCTTAAATTATCATGTcacaaaataaagtttaattttggTAAGAACAAATGTTACTTCATCATGCATTACATGATTTACAAGTTGGTAAACATTAgagctaaaataacaatgtcTGCATATGTGACTAATACACATGAATTTTGTCCTCAATCCTACATCGTCATTGTTTCCTTTAAAGACGAGGACTCCTTAGGAAAAGCTTCATCGAAACTGGACAGATCTACAGTGAGGTCATTCCTGAGAAAGTGGGGTTGTTGTCATACAAAACCCCTCATTCAGTAAAGACGGATGCCACATCATGTGAAGTATTTGTGCTAaaagtttttattgtttgtaaTATTGGTCTGTAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004580347.1 True 653 lncRNA 0.37 3 11629570 11631921
XR_004580348.1 False 648 lncRNA 0.37 3 11629570 11631912

Neighbor

gene id symbol gene type direction distance location
acsl3b acsl3b,LOC108280780,LOC108439858,LOC107738798,LOC107745612,LOC107567703,LOC107660143,LOC107552494,LOC105907082 coding downstream 57180 11549783 ~ 11572390 (-)
trnaw-cca_17 NA coding downstream 81131 11548368 ~ 11548439 (-)
LOC113533529 gpr55 coding downstream 133179 11492594 ~ 11496391 (-)
hes6 hes6 coding downstream 160783 11467120 ~ 11468787 (-)
gbp2 LOC108280462,LOC108280460 coding downstream 304324 11287176 ~ 11325246 (-)
LOC113533285 ephb1,LOC108430182,LOC107549839,LOC107671589 coding upstream 431945 12063866 ~ 12363593 (-)
gpc1b LOC108280809 coding upstream 804782 12436703 ~ 12523017 (-)
gpc5c LOC108280917 coding upstream 1003136 12635057 ~ 12722764 (-)
LOC117595730 NA coding upstream 1093013 12724934 ~ 12726494 (-)
LOC113533469 NA coding upstream 1120729 12752650 ~ 12754252 (-)
LOC113533221 NA non-coding downstream 218406 11394881 ~ 11411164 (-)
G318552 NA non-coding downstream 228068 11400665 ~ 11401502 (-)
G318479 NA non-coding downstream 442170 11187197 ~ 11187400 (-)
G318293 NA non-coding downstream 620400 11007152 ~ 11009170 (-)
G318202 NA non-coding downstream 708008 10845723 ~ 10921562 (-)
G318639 NA non-coding upstream 57568 11689489 ~ 11693334 (-)
G318660 NA non-coding upstream 169726 11801647 ~ 11801862 (-)
G319059 NA non-coding upstream 951944 12583865 ~ 12584089 (-)
G319163 NA non-coding upstream 1001972 12633893 ~ 12648886 (-)
G319178 NA non-coding upstream 1122847 12754768 ~ 12779226 (-)
ccl20a.3 LOC108261059 other downstream 1101291 10527282 ~ 10528279 (-)
LOC113542985 crem,crema,LOC108439856,LOC100534480,LOC107659668,LOC107563815 other downstream 2656295 8969204 ~ 8973275 (-)
pitrm1 pitrm1,LOC107698483,LOC107679400 other downstream 2675460 8903824 ~ 8954110 (-)
G317176 NA other downstream 2743861 8883649 ~ 8885709 (-)
vcpip1 vcpip1 other downstream 3140941 8477223 ~ 8488629 (-)
LOC113533649 LOC108280860,LOC108433106 other upstream 1276532 12908453 ~ 12928071 (-)
ccl25a NA other upstream 1980595 13612516 ~ 13615743 (-)
LOC113533556 LOC108280202 other upstream 2033260 13665181 ~ 13680110 (-)
theg NA other upstream 3099813 14731734 ~ 14745487 (-)
LOC113533479 LOC108280451 other upstream 3590857 15222778 ~ 15231580 (-)

Expression


Co-expression Network