LOC117599996


Basic Information

Item Value
gene id LOC117599996
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 19815214 ~ 19817065 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004580349.1
GTTACATCAGAGCTGGCGTCTGTGATGGACAAGTTGGAGACTGATGTTCgggtggagagacagaaaagAATATAGCTGGAGCCGTCACTGAGGTTACATCAAAGCTGACGTCTGTGATGGACAAGTTGGAGACTGATGTtccaggaggagagacagaaaagaatacAGCTGGAACCATTACTGAGGTTACAACAGTGTTGACGACTATAAAGGACAAGATGGAGTCTGAGGTTCCAagaaaggagacagaaaaggtaattTTGAGATCATCTTCTGATTAATTATGTCCAAAAGGATACCCATTGCCTGCTAATTTCACTAAACTAAACAGAAAATACTCCTAGCCTGGTTAATCTGTAACCTTAACATTTTGTTGTCTAATATTTCAGATTACCATTGTGAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004580349.1 True 403 lncRNA 0.41 3 19815214 19817065

Neighbor

gene id symbol gene type direction distance location
ptprfb ptprfb,LOC108280478 coding downstream 146319 19512722 ~ 19668895 (-)
st3gal3b LOC108280530 coding downstream 358799 19393253 ~ 19456415 (-)
LOC113546452 LOC108280527 coding downstream 430897 19364746 ~ 19384317 (-)
pif1 pif1,LOC107551719,LOC104945614,LOC107700539 coding downstream 484345 19316638 ~ 19330869 (-)
nsun4 nsun4 coding downstream 501540 19310150 ~ 19313674 (-)
pbx1a pbx1a,LOC103479586,LOC104918287,LOC103143038,LOC107083372,LOC103396165,LOC101069707,LOC108438878,LOC100704482,LOC108280905,LOC106929027,LOC107732204 coding upstream 92044 19909109 ~ 19985267 (-)
tmem275 LOC108280259 coding upstream 288907 20105972 ~ 20110891 (-)
kncn kncn,LOC107700491,LOC107710543 coding upstream 294305 20111370 ~ 20121708 (-)
cdc20 cdc20,LOC107732200,LOC107553255,LOC107700550,LOC107563294,LOC107710546,LOC107677877 coding upstream 333952 20151017 ~ 20157238 (-)
zfyve9a zfyve9,LOC108280307 coding upstream 368973 20186038 ~ 20211147 (-)
LOC117599987 NA non-coding downstream 1003 19810468 ~ 19814211 (-)
G323327 NA non-coding downstream 212878 19602109 ~ 19602336 (-)
G323308 NA non-coding downstream 321484 19438223 ~ 19493730 (-)
G323303 NA non-coding downstream 423857 19391157 ~ 19391357 (-)
G323298 NA non-coding downstream 428782 19386231 ~ 19386432 (-)
G323706 NA non-coding upstream 304705 20121770 ~ 20180561 (-)
G323709 NA non-coding upstream 312188 20129253 ~ 20185132 (-)
LOC117599978 NA non-coding upstream 553499 20370564 ~ 20376314 (-)
G323773 NA non-coding upstream 572176 20389241 ~ 20436040 (-)
G323781 NA non-coding upstream 600545 20417610 ~ 20442372 (-)
kdm4ab kdm4a,kdm4ab,LOC108280529,LOC107564389,LOC107684932,LOC107700543,LOC107551714,LOC107743373 other downstream 308017 19476112 ~ 19507197 (-)
G323011 rpl5,rpl5a,LOC102781853,LOC108436062,LOC101160347,LOC103149531,LOC106904255,LOC105920466,LOC106958298 other downstream 737297 19075000 ~ 19077917 (-)
tceanc2 tceanc2 other downstream 808835 19003239 ~ 19006379 (-)
mrpl37 mrpl37 other downstream 820578 18985173 ~ 18994636 (-)
G322826 NA other downstream 1059621 18753772 ~ 18755593 (-)
G323726 NA other upstream 378229 20195294 ~ 20195672 (-)
LOC113546371 NA other upstream 567136 20384201 ~ 20411806 (-)
LOC113546455 atr,LOC104958464,LOC107677746,LOC107700496,LOC107576458 other upstream 644950 20462015 ~ 20469569 (-)
sh3glb1b sh3glb1,LOC108280317,LOC107700566,LOC107677816,LOC107732941,LOC108414852,LOC107553268,LOC102780267,LOC107382675,LOC103377018 other upstream 849226 20666291 ~ 20714017 (-)
G323902 NA other upstream 1010961 20828026 ~ 20830104 (-)

Expression


Co-expression Network