trnap-agg_14


Basic Information

Item Value
gene id trnap-agg_14
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 11548108 ~ 11548179 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>trnap-agg_14
GGCTCGTTGGTCTAGGGGTATGATTCTCGCTTAGGGTGCGAGAGGTCCCGGGTTCAAATCCCGGACGAGCCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
trnap-agg_14 True 72 tRNA 0.61 1 11548108 11548179

Neighbor

gene id symbol gene type direction distance location
snorc c20h2orf82 coding upstream 3383 11535133 ~ 11544725 (+)
gigyf2 gigyf2,LOC103130361,LOC103143041 coding upstream 14547 11498327 ~ 11533561 (+)
itm2cb itm2c,LOC107569273,LOC107679406 coding upstream 68557 11473845 ~ 11479551 (+)
LOC117599968 LOC108280463,LOC108280461,LOC108280465 coding upstream 173399 11357570 ~ 11374709 (+)
LOC113533220 LOC108280463,LOC108280465,LOC108280461,LOC108428334 coding upstream 205969 11324127 ~ 11342139 (+)
trnai-aau_17 NA coding downstream 936 11549115 ~ 11549188 (+)
trnag-ccc_6 NA coding downstream 24648 11572827 ~ 11572897 (+)
pax3a pax3a,LOC108280216,LOC108439877 coding downstream 48520 11596699 ~ 11622845 (+)
LOC113533522 NA coding downstream 868331 12416510 ~ 12428531 (+)
LOC113533470 NA coding downstream 1234358 12782537 ~ 12796824 (+)
G318426 NA non-coding upstream 144052 11403264 ~ 11404056 (+)
G318331 NA non-coding upstream 378969 11106795 ~ 11169139 (+)
G318332 mbnl1,LOC108280526,LOC107567699,LOC107679403,LOC107745615 non-coding upstream 428281 11112953 ~ 11119827 (+)
G318273 NA non-coding upstream 538962 11007948 ~ 11009146 (+)
G318248 klhl24 non-coding upstream 560532 10959921 ~ 10987576 (+)
G318647 NA non-coding downstream 225764 11773943 ~ 11774148 (+)
G318658 NA non-coding downstream 250779 11798958 ~ 11799181 (+)
LOC117599957 NA non-coding downstream 285129 11833308 ~ 11846411 (+)
G318683 NA non-coding downstream 322588 11870767 ~ 11870966 (+)
G318697 NA non-coding downstream 477029 12025208 ~ 12025443 (+)
G318439 NA other upstream 78609 11467299 ~ 11469499 (+)
per2 LOC108280459,LOC108439864 other upstream 83339 11399884 ~ 11464769 (+)
camk2n1a camk2n2,camk2n1a,LOC107659987,LOC107600060,LOC107557885 other upstream 814020 10730346 ~ 10734088 (+)
eif4e2 eif4e2,LOC107600102,LOC107579667,LOC107749152,LOC107730458 other upstream 979201 10563821 ~ 10568907 (+)
capn10 capn10 other upstream 985114 10536431 ~ 10562994 (+)
G319170 NA other downstream 1216876 12765055 ~ 12803019 (+)
sema6ba si:ch211-168n16.1,LOC108280795,LOC108433102,LOC107713651,LOC107600229,LOC107757803,LOC107662975,LOC107698499,LOC105903857 other downstream 1472963 13021142 ~ 13154527 (+)
LOC113533270 mtcl1 other downstream 2289254 13837433 ~ 13897914 (+)
zmp:0000000521 zmp:0000000521,LOC108280721,LOC107696078,LOC108442439,LOC107596226,LOC105888700 other downstream 2532070 14080249 ~ 14127012 (+)
rab31 rab31 other downstream 2838059 14386238 ~ 14466753 (+)

Expression


Co-expression Network