trnap-ugg_22


Basic Information

Item Value
gene id trnap-ugg_22
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 20915404 ~ 20915475 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>trnap-ugg_22
GGCTCGTTGGTCTAGGGGTATGATTCTCGCTTTGGGTGTGAGCGGTCCCGGGTTCAAATCCCGGACGAGCCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
trnap-ugg_22 True 72 tRNA 0.61 1 20915404 20915475

Neighbor

gene id symbol gene type direction distance location
tecrl2b LOC108280320 coding upstream 22407 20886260 ~ 20892997 (+)
col11a1b col11a1b,LOC107594685,LOC107680048,LOC107700498,LOC107564536,LOC107710593,LOC104931259 coding upstream 31798 20807627 ~ 20883606 (+)
amer3 amer3 coding upstream 312873 20592866 ~ 20602531 (+)
atr atr,LOC107677746,LOC107700496 coding upstream 325946 20572562 ~ 20589458 (+)
spef2 spef2 coding upstream 343066 20532000 ~ 20572338 (+)
LOC113524959 LOC108280417 coding downstream 65274 20980749 ~ 20991604 (+)
LOC117595742 LOC108280410 coding downstream 210398 21125873 ~ 21127829 (+)
G323578 NA non-coding upstream 210210 20672934 ~ 20705194 (+)
G323577 NA non-coding upstream 242950 20671728 ~ 20672454 (+)
G323576 NA non-coding upstream 245244 20669685 ~ 20670160 (+)
G323574 NA non-coding upstream 262043 20652233 ~ 20653361 (+)
G323553 NA non-coding upstream 311212 20528505 ~ 20604192 (+)
G323603 NA non-coding downstream 17757 20933232 ~ 20946079 (+)
G323624 NA non-coding downstream 52038 20967513 ~ 21024078 (+)
LOC117599988 NA non-coding downstream 108697 21024172 ~ 21024556 (+)
G323625 NA non-coding downstream 110946 21026421 ~ 21037720 (+)
G323643 NA non-coding downstream 111350 21026825 ~ 21089934 (+)
arhgef4 arhgef4,LOC107700563,LOC107710620,LOC107732940 other upstream 251585 20637584 ~ 20663819 (+)
G323534 NA other upstream 474843 20438702 ~ 20440561 (+)
clcn2a clcn2a,clcn2,LOC108280323,LOC107710554,LOC107732945 other upstream 634337 20129253 ~ 20281067 (+)
LOC113546339 NA other upstream 1599198 19313860 ~ 19316206 (+)
gng12a gbg12,gng12a,gng12,LOC107705318,LOC107700509,LOC105895117 other upstream 1695175 19204658 ~ 19220229 (+)
G323615 NA other downstream 105714 21021189 ~ 21157280 (+)

Expression


Co-expression Network