trnap-ugg_23


Basic Information

Item Value
gene id trnap-ugg_23
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 21142277 ~ 21142348 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>trnap-ugg_23
GGCTCGTTGGTCTAGGGGTATGATTCTCGCTTTGGGTGCGAGAGGTCCCGGGTTCAAATCCCGGACGAGCCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
trnap-ugg_23 True 72 tRNA 0.61 1 21142277 21142348

Neighbor

gene id symbol gene type direction distance location
LOC117595742 LOC108280410 coding upstream 14448 21125873 ~ 21127829 (+)
LOC113524959 LOC108280417 coding upstream 150673 20980749 ~ 20991604 (+)
trnap-ugg_22 NA coding upstream 226802 20915404 ~ 20915475 (+)
tecrl2b LOC108280320 coding upstream 249280 20886260 ~ 20892997 (+)
col11a1b col11a1b,LOC107594685,LOC107680048,LOC107700498,LOC107564536,LOC107710593,LOC104931259 coding upstream 258671 20807627 ~ 20883606 (+)
G323618 NA non-coding upstream 2590 21137913 ~ 21139687 (+)
G323676 NA non-coding upstream 7818 21133446 ~ 21134459 (+)
G323621 NA non-coding upstream 9916 21130233 ~ 21132361 (+)
G323669 NA non-coding upstream 22861 21105444 ~ 21119416 (+)
G323661 NA non-coding upstream 48899 21086944 ~ 21093378 (+)
trnai-aau_18 NA non-coding downstream 4602 21146950 ~ 21147023 (+)
arhgef4 arhgef4,LOC107700563,LOC107710620,LOC107732940 other upstream 478458 20637584 ~ 20663819 (+)
G323534 NA other upstream 701716 20438702 ~ 20440561 (+)
clcn2a clcn2a,clcn2,LOC108280323,LOC107710554,LOC107732945 other upstream 861210 20129253 ~ 20281067 (+)
LOC113546339 NA other upstream 1826071 19313860 ~ 19316206 (+)
gng12a gbg12,gng12a,gng12,LOC107705318,LOC107700509,LOC105895117 other upstream 1922048 19204658 ~ 19220229 (+)

Expression


Co-expression Network