trnas-aga_13


Basic Information

Item Value
gene id trnas-aga_13
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 3625416 ~ 3625497 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>trnas-aga_13
GTAGTCGTGGCCGAGTGGTTAAGGCGATGGACTAGAAATCCATTGGGGTCTCCCCGCGCAGGTTCGAATCCTGCCGACTACG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
trnas-aga_13 True 82 tRNA 0.59 1 3625416 3625497

Neighbor

gene id symbol gene type direction distance location
atg5 atg5,LOC107697282 coding upstream 102203 3502067 ~ 3523213 (+)
sall3a sall3,LOC108435487 coding upstream 307465 3298344 ~ 3317951 (+)
nrn1b LOC108280273 coding upstream 542665 3080016 ~ 3082751 (+)
nebl nebl,LOC107722518,LOC107718172,LOC107688530 coding upstream 605953 3014486 ~ 3019463 (+)
bmi1b LOC108280883,LOC103034194,LOC108444227,LOC107689401,LOC107585379 coding upstream 640114 2975646 ~ 2985302 (+)
trnas-aga_14 NA coding downstream 463 3625960 ~ 3626030 (+)
trnas-aga_16 NA coding downstream 2535 3628032 ~ 3628113 (+)
LOC113543357 NA coding downstream 16818 3642315 ~ 3646672 (+)
nt5c3a nt5c3a,LOC107697280,LOC107720166,LOC107581689,LOC107714420 coding downstream 22250 3647747 ~ 3662687 (+)
pmvk pmvk coding downstream 187756 3813253 ~ 3816854 (+)
G313853 NA non-coding upstream 100898 3524309 ~ 3524518 (+)
G313796 NA non-coding upstream 326110 3299098 ~ 3299306 (+)
G313607 NA non-coding upstream 549046 3076049 ~ 3076370 (+)
LOC113543325 NA non-coding upstream 680209 2942487 ~ 2945207 (+)
G313494 NA non-coding upstream 835920 2789242 ~ 2789496 (+)
G313949 NA non-coding downstream 147573 3773070 ~ 3819909 (+)
G313975 NA non-coding downstream 181651 3807148 ~ 3808690 (+)
G313990 NA non-coding downstream 220360 3845857 ~ 3846095 (+)
LOC117599982 NA non-coding downstream 262530 3888027 ~ 3895685 (+)
G314222 NA non-coding downstream 371005 3996502 ~ 4000314 (+)
LOC113543208 LOC108280571,LOC108435486 other upstream 136049 3423567 ~ 3489367 (+)
trnat-agu_12 NA other upstream 736028 2889315 ~ 2889388 (+)
G313445 fbxl7,LOC108280577,LOC107689422,LOC105900492 other upstream 949568 2675281 ~ 2675848 (+)
LOC117599997 LOC108280771,LOC108435500 other upstream 963017 2655200 ~ 2662399 (+)
G313112 zswim5 other upstream 1439739 2181979 ~ 2185677 (+)
LOC113543063 stx1a,LOC105005600,LOC102795677 other downstream 966943 4592440 ~ 4762095 (+)
pou3f2b pou3f3,pou3f3a,LOC108280934,LOC105896554,LOC108266720 other downstream 1162351 4787848 ~ 4789835 (+)
LOC113543089 mbp other downstream 1275973 4901470 ~ 4958121 (+)
sptssb sptssb,LOC107567691,LOC107703014,LOC107750122 other downstream 1462342 5087839 ~ 5091273 (+)
kpna4 kpna4,LOC107703033,LOC107750083,LOC107720438,LOC107662578 other downstream 1575524 5201021 ~ 5216591 (+)

Expression


Co-expression Network