G324026


Basic Information

Item Value
gene id G324026
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 57345 ~ 58552 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU383856
GGCGGAAGCTTTCTGATAAAGTTCTCCGcagtttcttcattttgttcagGGTTTGTTGCTTTTTTCTGAAGCTGCCGCTACATCACACATGtccgcgcgcgcacacacacacacacgcgcacgaacacacacgcacacacattcatgcattaCACTGCAGTCTGAAGAGACATGGTTAATCAGATTCTTTGATTATGGTgaagaaaagtgaaagagaaTCAGTTGGATGGCATTCCCGTCTCATTCCCGTCTCATTCCCGTCTCACTCCGTCTCACTCCCGTCTCACTCATTCTCAAACTTGCTGTACGGGTGATCAGAGTCTGACATCAAACCTGCatagacacgcacacacacgtgcacacacgcacacacacatgcacacac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU383856 True 385 lncRNA 0.49 2 57345 58552

Neighbor

gene id symbol gene type direction distance location
ggctb NA coding upstream 42773 5556 ~ 14572 (+)
LOC113525566 LOC108278025 coding downstream 5025 63577 ~ 67999 (+)
xrcc1 xrcc1,LOC107565304,LOC107737754 coding downstream 18646 77198 ~ 95728 (+)
LOC113525556 LOC108278024 coding downstream 38247 96799 ~ 107798 (+)
ethe1 ethe1,LOC106582613,LOC106605166 coding downstream 49666 108218 ~ 115146 (+)
zgc:114181 LOC108261199 coding downstream 163965 222517 ~ 231494 (+)
G324041 NA non-coding downstream 33400 91952 ~ 92848 (+)
G324042 NA non-coding downstream 57862 116414 ~ 120887 (+)
G324039 LOC108256235 non-coding downstream 58415 116967 ~ 150990 (+)
G324045 NA non-coding downstream 78549 137101 ~ 138861 (+)
G324060 NA non-coding downstream 160280 218832 ~ 219099 (+)
nod1 nod1 other upstream 21573 25296 ~ 35772 (+)
G324020 NA other upstream 34135 22297 ~ 23210 (+)
cmc1 cmc1 other downstream 123915 182467 ~ 193845 (+)
tbx20 tbx20,LOC107600539,LOC107719124,LOC107592953,LOC107666841 other downstream 181818 240370 ~ 327939 (+)
G324068 NA other downstream 182645 241197 ~ 292588 (+)
G324067 NA other downstream 296229 354781 ~ 412109 (+)
G324085 NA other downstream 379839 438391 ~ 442287 (+)

Expression


Co-expression Network