G324042


Basic Information

Item Value
gene id G324042
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 116414 ~ 120887 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU383885
ACCCGGTCAGCGCTGACACTCCAGTGCGCTCGCGCTCTCACTGTCCTGTAAACCGAACGAAAGTAAACCCCGCGCGCGCGgtctgtgagtgagtgtgactGAGTGTCTGTGTGCGCGCGAGATCGGAACCGGAGCGGCGGAACCGCACTGACCCTCGCGCGCACCGGAGCACcgataaatgtttattttaaagtttctcCTGGATCAGGGCTGATCTTAGTGAGGACCGCTGCTCCAGCTCAAGCGGAAGAATGAACCGGAAGTGTGGAACAGggcagagagacacacacattcctgaGGGGTGAGACAGTTGGGGAGGTGACGGGTTCGACAGGTCTGGGGAGCTTCACACGCtcatattattgtttttgtaaatgtCGGTGAACATGTTGAGTCGATTTCTCACCTGCTCACATGTTCACGAGTTCAGCATCACTCCTGCTATTACAGCTTAATAACGCTTAATAACACTCATTCTATCATTCAGGTACAGTTCTGACCTCAAAATAGCGTCATTACTGCTGAGTAaccaatcacact

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU383885 True 540 lncRNA 0.52 2 116414 120887

Neighbor

gene id symbol gene type direction distance location
ethe1 ethe1,LOC106582613,LOC106605166 coding upstream 1268 108218 ~ 115146 (+)
LOC113525556 LOC108278024 coding upstream 8616 96799 ~ 107798 (+)
xrcc1 xrcc1,LOC107565304,LOC107737754 coding upstream 20686 77198 ~ 95728 (+)
LOC113525566 LOC108278025 coding upstream 48415 63577 ~ 67999 (+)
ggctb NA coding upstream 101842 5556 ~ 14572 (+)
zgc:114181 LOC108261199 coding downstream 101630 222517 ~ 231494 (+)
dpy19l1l dpy19l1 coding downstream 212797 333684 ~ 350549 (+)
LOC117595771 NA coding downstream 334629 455516 ~ 456979 (+)
LOC113524801 NA coding downstream 339326 460213 ~ 466623 (+)
ppox ppox coding downstream 349069 469956 ~ 483298 (+)
G324041 NA non-coding upstream 23566 91952 ~ 92848 (+)
G324026 NA non-coding upstream 57862 57345 ~ 58552 (+)
G324045 NA non-coding downstream 16214 137101 ~ 138861 (+)
G324060 NA non-coding downstream 97945 218832 ~ 219099 (+)
LOC113523709 NA non-coding downstream 112727 233614 ~ 234831 (+)
G324064 NA non-coding downstream 205644 326531 ~ 355303 (+)
G324082 NA non-coding downstream 211036 331923 ~ 332801 (+)
nod1 nod1 other upstream 80642 25296 ~ 35772 (+)
G324020 NA other upstream 93204 22297 ~ 23210 (+)
cmc1 cmc1 other downstream 61580 182467 ~ 193845 (+)
tbx20 tbx20,LOC107600539,LOC107719124,LOC107592953,LOC107666841 other downstream 119483 240370 ~ 327939 (+)
G324068 NA other downstream 120310 241197 ~ 292588 (+)
G324067 NA other downstream 233894 354781 ~ 412109 (+)
G324085 NA other downstream 317504 438391 ~ 442287 (+)

Expression


Co-expression Network