G324064


Basic Information

Item Value
gene id G324064
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 326531 ~ 355303 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU383910
gtttggtagaggtttgtggtgtgtgtgtgtgtttggtggagttttgtgatatgtgtgtgtgtgtgtgtgtgtgtttggtagaggtttgtggtgtgtgtgtttgtttggtggAGTtttgtgatatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgggtggagttttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtccttatgAAACCTGACAGTACTGATATGAGGAAAAACTTTTTCTAAAACTCTCTTTTCTCCCAAACTACATCCGCTTTAAAGACACTGGAGGTTCGTAAACATGGAGGAGTTTATGAGGGGAGTTGAGTTTTTCTACTGCAGCTAAACGGCGCCTCCTGGTGGCCGGATTCATCACTGCAGCCACCTGAGGAGCGAATAAACTTCACCACACTGTCAGCTGTTTCATCAGTTTAATCAAAAACACACTTCAGATCAATGAGATGCAAAtatttaaatctgtaaatacGCCATACTTATTTACATACAATGAAAGAAAGTGGAGAACTGAAGCAGTTACACAAGTCttctgttttgttaaaaaaaaagttcttatgATGAGATGGGAAAGAAGAACACAGGAACCTTCCACTCGTTCCTCTCGCCTGATGAAGAACCCAACAGCGGCGGAGATGAGAAACTTGAGCAGCACTCGTTCAGCAGAATCAGGCCAGACGTCGACCACCACGCTGCTGTTTGTGGGTTTATTTCTTCTGTAAGGGGTCAAAGttcactgtgtgcatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtggtgt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU383910 True 800 lncRNA 0.44 2 326531 355303

Neighbor

gene id symbol gene type direction distance location
zgc:114181 LOC108261199 coding upstream 95037 222517 ~ 231494 (+)
ethe1 ethe1,LOC106582613,LOC106605166 coding upstream 211385 108218 ~ 115146 (+)
LOC113525556 LOC108278024 coding upstream 218733 96799 ~ 107798 (+)
xrcc1 xrcc1,LOC107565304,LOC107737754 coding upstream 230803 77198 ~ 95728 (+)
LOC113525566 LOC108278025 coding upstream 258532 63577 ~ 67999 (+)
LOC117595771 NA coding downstream 100213 455516 ~ 456979 (+)
LOC113524801 NA coding downstream 104910 460213 ~ 466623 (+)
ppox ppox coding downstream 114653 469956 ~ 483298 (+)
zgc:162160 LOC108256255,LOC108437392,LOC107719116,LOC107666762,LOC107737835,LOC107592933 coding downstream 150011 505314 ~ 524157 (+)
etsrp LOC108256243 coding downstream 295615 650918 ~ 657392 (+)
LOC113523709 NA non-coding upstream 91700 233614 ~ 234831 (+)
G324060 NA non-coding upstream 107432 218832 ~ 219099 (+)
G324039 LOC108256235 non-coding upstream 175541 116967 ~ 150990 (+)
G324045 NA non-coding upstream 187670 137101 ~ 138861 (+)
G324042 NA non-coding upstream 205644 116414 ~ 120887 (+)
G324089 NA non-coding downstream 3820 359123 ~ 361065 (+)
G324083 NA non-coding downstream 10185 365488 ~ 437810 (+)
G324116 smarcc1 non-coding downstream 89474 444777 ~ 446125 (+)
G324139 NA non-coding downstream 188565 543868 ~ 548283 (+)
G324140 LOC106578455,LOC103388722 non-coding downstream 197420 552723 ~ 557118 (+)
G324068 NA other upstream 33943 241197 ~ 292588 (+)
cmc1 cmc1 other upstream 132686 182467 ~ 193845 (+)
nod1 nod1 other upstream 290759 25296 ~ 35772 (+)
G324020 NA other upstream 303321 22297 ~ 23210 (+)
G324085 NA other downstream 83088 438391 ~ 442287 (+)
G324120 NA other downstream 99607 454910 ~ 466625 (+)
G324143 NA other downstream 202112 557415 ~ 558139 (+)
G324123 NA other downstream 211899 567202 ~ 635045 (+)
G324161 fbl,LOC107719117,LOC107666874,LOC107737817,LOC107686016,LOC107600489 other downstream 252309 607612 ~ 610009 (+)

Expression


Co-expression Network