Item | Value |
---|---|
gene id | tbx20 |
gene name | tbx20,LOC107600539,LOC107719124,LOC107592953,LOC107666841 |
gene type | misc |
species | striped catfish (Pangasianodon hypophthalmus) |
category of species | economic fish |
Item | Value |
---|---|
chromosome id | NC_047616.1 |
NCBI id | CM018562.1 |
chromosome length | 21037487 |
location | 240370 ~ 327939 (+) |
genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
symbol | description |
---|---|
tbx20 | Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within several processes, including circulatory system development; cloaca development; and regulation of cardiac muscle cell proliferation. Predicted to be located in nucleus. Is expressed in several structures, including cardiovascular system; digestive system; integument; mesoderm; and nervous system. Human ortholog(s) of this gene implicated in atrial heart septal defect 4. Orthologous to human TBX20 (T-box transcription factor 20). |
description |
---|
PREDICTED: T-box transcription factor TBX20 isoform X1 |
id | description |
---|---|
K10185 | TBX20; T-box protein 20 |
RNA id | representative | length | rna type | GC content | exon number | start site | end site |
---|---|---|---|---|---|---|---|
TU383912 | False | 2217 | lncRNA | 0.48 | 5 | 240370 | 327939 |
TU383913 | False | 2958 | TUCP | 0.45 | 4 | 315350 | 321774 |
TU383926 | False | 535 | TUCP | 0.54 | 4 | 306181 | 311233 |
TU383927 | False | 876 | lncRNA | 0.45 | 2 | 301873 | 303209 |
XM_034298133.1 | True | 3579 | mRNA | 0.49 | 8 | 301880 | 321183 |
gene id | symbol | gene type | direction | distance | location |
---|---|---|---|---|---|
zgc:114181 | LOC108261199 | coding | upstream | 8876 | 222517 ~ 231494 (+) |
ethe1 | ethe1,LOC106582613,LOC106605166 | coding | upstream | 125224 | 108218 ~ 115146 (+) |
LOC113525556 | LOC108278024 | coding | upstream | 132572 | 96799 ~ 107798 (+) |
xrcc1 | xrcc1,LOC107565304,LOC107737754 | coding | upstream | 144642 | 77198 ~ 95728 (+) |
LOC113525566 | LOC108278025 | coding | upstream | 172371 | 63577 ~ 67999 (+) |
dpy19l1l | dpy19l1 | coding | downstream | 5745 | 333684 ~ 350549 (+) |
LOC117595771 | NA | coding | downstream | 127577 | 455516 ~ 456979 (+) |
LOC113524801 | NA | coding | downstream | 132274 | 460213 ~ 466623 (+) |
ppox | ppox | coding | downstream | 142017 | 469956 ~ 483298 (+) |
zgc:162160 | LOC108256255,LOC108437392,LOC107719116,LOC107666762,LOC107737835,LOC107592933 | coding | downstream | 177375 | 505314 ~ 524157 (+) |
LOC113523709 | NA | non-coding | upstream | 5539 | 233614 ~ 234831 (+) |
G324060 | NA | non-coding | upstream | 21271 | 218832 ~ 219099 (+) |
G324039 | LOC108256235 | non-coding | upstream | 89380 | 116967 ~ 150990 (+) |
G324045 | NA | non-coding | upstream | 101509 | 137101 ~ 138861 (+) |
G324042 | NA | non-coding | upstream | 119483 | 116414 ~ 120887 (+) |
G324082 | NA | non-coding | downstream | 3984 | 331923 ~ 332801 (+) |
G324089 | NA | non-coding | downstream | 31184 | 359123 ~ 361065 (+) |
G324083 | NA | non-coding | downstream | 37549 | 365488 ~ 437810 (+) |
G324116 | smarcc1 | non-coding | downstream | 116838 | 444777 ~ 446125 (+) |
G324139 | NA | non-coding | downstream | 215929 | 543868 ~ 548283 (+) |
cmc1 | cmc1 | other | upstream | 46525 | 182467 ~ 193845 (+) |
nod1 | nod1 | other | upstream | 204598 | 25296 ~ 35772 (+) |
G324020 | NA | other | upstream | 217160 | 22297 ~ 23210 (+) |
G324067 | NA | other | downstream | 26842 | 354781 ~ 412109 (+) |
G324085 | NA | other | downstream | 110452 | 438391 ~ 442287 (+) |
G324120 | NA | other | downstream | 126971 | 454910 ~ 466625 (+) |
G324143 | NA | other | downstream | 229476 | 557415 ~ 558139 (+) |
G324123 | NA | other | downstream | 239263 | 567202 ~ 635045 (+) |