G324083


Basic Information

Item Value
gene id G324083
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 365488 ~ 437810 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU383937
CTCGGGGAAGCggtgagcaggtgtgtgttctCAGACAGGAAGATAAAGTACAGACGTGTGCGTAGAAAAAGGGCCACAGCAGTTTATTTCAGGGTTTCAGTACCTCTTACACTTTAAAAAGCTCAATGTGCCAGGAACAGACGCGTCTACACAAAGTTTATTCTCTTAaaaatacatcatcatcatcatcatcaagctTAAACTCATACATTGCCATgaagcagagacacacagagagagagagagagagagacacacacagctcctgTCTAACAGAACAGTACAGTGTGGAAGCTCTACAcaagtgtgtaacagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttgtaacgTGGGAAACGTGATCACCTGAGGAAAAGGAGGATAAAAATCAACCTCCACACAGCAGTAACGCAGCAGTCACacgggcagagagagagagagagagagagagagaattaagaTAAAGGAGAGCGCAAAAAAAAGGAACTACAGATGACAGCGATAAAGAGAAACTGagggaaaaacaaataaagagattagagggagaaatagagagagagagagagaaagagagagagagagagagagagagagagagagagagaggggagaggtaGTAGAGACAGAGGTAGCGTAGCAGAACTATATTAGGAGCTCAGGAGCTTTaaaggccacacacacacacacacacacacacacacacacacacacacacacacacacacaaacctctaTTACAGCTTGTAGagaagaaagtgtgtgttacattaaTTTCTATTGTGTTACAAGCCAAGAGCTtcatgaaacacaaacacacacacacacacacggtccaGCAGAGAGGTAGATTCTAAGAGATAAGGAAGAAAGGAAGCTCGACTtgactgccacacacacacacacacacacacacacacacagcaggggcAGAAGCTGTTTACCAGCTCCGAGTTAACAGTGTTAAGTGTGTATCAGTAGCGcaaggtctgtgtgtgtgtgtgtgtgtgtgtgtcacacacacacacacacacacacacacaccactcacattATTGCCCCACACAGGCAAataaaataagagagagagcctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgctgacagtAAAGGTGTGAGAGCAGATCTATATCAGGAGCTGCGTTAAAGAAGAAACACATacgagtgtgtgtctgtgtgggtttctgtgtgtgtgttagttttcaGGGGGGCGGACAGGAAGTGAGGTCGCTGGAGCCGGCGGTATCCCATCAGGCtgtgcagaagaagaagaaggaggaggaggaggggggccAGGGTCTGTAAGGGTGAAATAAATGATTGTTAGGATCCTGAAATTCAtgtttacacacattattacatcacttcctgtgatGTCTAATTGGTCGACATTATCCTCTgctgcattaattataaataaacctgcactactgtcagagctgctgttatagaaaatgaatcaacaccttctgaccaatcagagtgcaggattcagaggcgctgtggtgtaaagggTAATAAACACTCACACATGCCGTTCGGGGCTCCGGGGTGTCTGGGGCCCATCAGAGGGGGCATCGCGCCTGGCGGAGCTCCGGGCATCGCACCAGGGGGGGCACCGGGCATCATACGGCCTGGCATGGGCTGCCCCGGTCCAACCATCGgccctgtacacacacacacacacaca
>TU383939
gagagaagagagaggagagagagagagagagagaaagagagagagagagagagagagagagagagagagagagagagagagaggggagaggtaGTAGAGACAGAGGTAGCGTAGCAGAACTATATTAGGAGCTCAGGAGCTTTaaaggccacacacacacacacacacacacacacacacacacacacacacacacacacacaaacctctaTTACAGCTTGTAGagaagaaagtgtgtgttacattaaTTTCTATTGTGTTACAAGCCAAGAGCTtcatgaaacacaaacacacacacacacacacggtccaGCAGAGAGGTAGATTCTAAGAGATAAGGAAGAAAGGAAGCTCGACTtgactgccacacacacacacacacacacacacacacacagcaggggcAGAAGCTGTTTACCAGCTCCGAGTTAACAGTGTTAAGTGTGTATCAGTAGCGcaaggtctgtgtgtgtgtgtgtgtgtgtgtgtcacacacacacacacacacacacacacaccactcacattATTGCCCCACACAGGCAAataaaataagagagagagcctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgctgacagtAAAGGTGTGAGAGCAGATCTATATCAGGAGCTGCGTTAAAGAAGAAACACATacgagtgtgtgtctgtgtgggtttctgtgtgtgtgttagttttcaGGGGGGCGGACAGGAAGTGAGGTCGCTGGAGCCGGCGGTATCCCATCAGGCtgtgcagaagaagaagaaggaggaggaggaggggggccAGGGTCTGTAAGGGTGAAATAAATGATTGTTAGGATCCTGAAATTCAtgtttacacacattattacatcacttcctgtgatGTCTAATTGGTCGACATTATCCTCTgctgcattaattataaataaacctgcactactgtcagagctgctgttatagaaaatgaatcaacaccttctgaccaatcagagtgcaggattcagaggcgctgtggtgtaaagggTAATAAACACTCACACATGCCGTTCGGGGCTCCGGGGTGTCTGGGGCCCATCAGAGGGGGCATCGCGCCTGGCGGAGCTCCGGGCATCGCACCAGGGGGGGCACCGGGCATCATACGGCCTGGCATGGGCTGCCCCGGTCCAACCATCGgccctgtacacacacacacacacaca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU383937 True 1718 lncRNA 0.47 3 436049 437810
TU383939 False 1186 lncRNA 0.49 3 365488 437810

Neighbor

gene id symbol gene type direction distance location
dpy19l1l dpy19l1 coding upstream 14939 333684 ~ 350549 (+)
zgc:114181 LOC108261199 coding upstream 133994 222517 ~ 231494 (+)
ethe1 ethe1,LOC106582613,LOC106605166 coding upstream 250342 108218 ~ 115146 (+)
LOC113525556 LOC108278024 coding upstream 257690 96799 ~ 107798 (+)
xrcc1 xrcc1,LOC107565304,LOC107737754 coding upstream 269760 77198 ~ 95728 (+)
LOC117595771 NA coding downstream 17706 455516 ~ 456979 (+)
LOC113524801 NA coding downstream 22403 460213 ~ 466623 (+)
ppox ppox coding downstream 32146 469956 ~ 483298 (+)
zgc:162160 LOC108256255,LOC108437392,LOC107719116,LOC107666762,LOC107737835,LOC107592933 coding downstream 67504 505314 ~ 524157 (+)
etsrp LOC108256243 coding downstream 213108 650918 ~ 657392 (+)
G324089 NA non-coding upstream 4423 359123 ~ 361065 (+)
G324064 NA non-coding upstream 10185 326531 ~ 355303 (+)
G324082 NA non-coding upstream 32687 331923 ~ 332801 (+)
LOC113523709 NA non-coding upstream 130657 233614 ~ 234831 (+)
G324060 NA non-coding upstream 146389 218832 ~ 219099 (+)
G324116 smarcc1 non-coding downstream 6967 444777 ~ 446125 (+)
G324139 NA non-coding downstream 106058 543868 ~ 548283 (+)
G324140 LOC106578455,LOC103388722 non-coding downstream 114913 552723 ~ 557118 (+)
G324142 dyrk1b,LOC102785375 non-coding downstream 117987 555797 ~ 556519 (+)
G324151 NA non-coding downstream 135196 573006 ~ 575138 (+)
tbx20 tbx20,LOC107600539,LOC107719124,LOC107592953,LOC107666841 other upstream 37549 240370 ~ 327939 (+)
G324068 NA other upstream 72900 241197 ~ 292588 (+)
cmc1 cmc1 other upstream 171643 182467 ~ 193845 (+)
nod1 nod1 other upstream 329716 25296 ~ 35772 (+)
G324020 NA other upstream 342278 22297 ~ 23210 (+)
G324085 NA other downstream 581 438391 ~ 442287 (+)
G324120 NA other downstream 17100 454910 ~ 466625 (+)
G324143 NA other downstream 119605 557415 ~ 558139 (+)
G324123 NA other downstream 129392 567202 ~ 635045 (+)
G324161 fbl,LOC107719117,LOC107666874,LOC107737817,LOC107686016,LOC107600489 other downstream 169802 607612 ~ 610009 (+)

Expression


Co-expression Network